RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 KRTAP12-1P59990 96 aa5.26□□□□□ -1.57
USP48-210ENST00000489108 TNP1P09430 55 aa5.16□□□□□ -1.58
USP48-210ENST00000489108 AHNAKQ09666 5890 aaKnown RBP5.13□□□□□ -1.59
USP48-210ENST00000489108 KRTAP12-3P60328 96 aa5.13□□□□□ -1.59
USP48-210ENST00000489108 SERP1Q9Y6X1 66 aa5.13□□□□□ -1.59
USP48-210ENST00000489108 MUC5ACP98088 5654 aa5.12□□□□□ -1.59
USP48-210ENST00000489108 SEC61GP60059 68 aa5.11□□□□□ -1.59
USP48-210ENST00000489108 A0A1B0GU33 70 aa5.1□□□□□ -1.59
USP48-210ENST00000489108 KRTAP5-8O75690 187 aa5.1□□□□□ -1.59
USP48-210ENST00000489108 PCP4L1A6NKN8 68 aa5.09□□□□□ -1.59
USP48-210ENST00000489108 SNURFQ9Y675 71 aa5.08□□□□□ -1.6
USP48-210ENST00000489108 MUC5BQ9HC84 5762 aaPredicted RBP5.06□□□□□ -1.6
USP48-210ENST00000489108 SPANXA2-OT1Q8N9U9 137 aa5.05□□□□□ -1.6
USP48-210ENST00000489108 KRTAP5-2Q701N4 177 aa5.03□□□□□ -1.6
USP48-210ENST00000489108 SMIM20Q8N5G0 67 aa5.01□□□□□ -1.61
USP48-210ENST00000489108 COA5Q86WW8 74 aa4.98□□□□□ -1.61
USP48-210ENST00000489108 A8MU10 97 aa4.96□□□□□ -1.62
USP48-210ENST00000489108 SMIM26A0A096LP01 95 aa4.94□□□□□ -1.62
USP48-210ENST00000489108 J3QR89 54 aa4.89□□□□□ -1.63
USP48-210ENST00000489108 OBSCNQ5VST9 7968 aa4.89□□□□□ -1.63
USP48-210ENST00000489108 KRTAP6-1Q3LI64 71 aa4.85□□□□□ -1.63
USP48-210ENST00000489108 MT1AP04731 61 aa4.81□□□□□ -1.64
USP48-210ENST00000489108 A0A1B0GV90 55 aa4.75□□□□□ -1.65
USP48-210ENST00000489108 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
USP48-210ENST00000489108 KRTAP6-2Q3LI66 62 aa4.75□□□□□ -1.65
USP48-210ENST00000489108 SERP2Q8N6R1 65 aa4.75□□□□□ -1.65
USP48-210ENST00000489108 A0A1B0GU69 56 aa4.74□□□□□ -1.65
USP48-210ENST00000489108 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
USP48-210ENST00000489108 KRTAP25-1Q3LHN0 102 aa4.65□□□□□ -1.67
USP48-210ENST00000489108 KRTAP5-1Q6L8H4 278 aa4.63□□□□□ -1.67
USP48-210ENST00000489108 KRTAP15-1Q3LI76 137 aa4.6□□□□□ -1.67
USP48-210ENST00000489108 KRTAP9-6A8MVA2 160 aa4.45□□□□□ -1.7
USP48-210ENST00000489108 H7BZZ5 65 aa4.44□□□□□ -1.7
USP48-210ENST00000489108 MT3P25713 68 aa4.43□□□□□ -1.7
USP48-210ENST00000489108 K7ERU9 68 aa4.42□□□□□ -1.7
USP48-210ENST00000489108 PRR15LQ9BU68 103 aa4.39□□□□□ -1.71
USP48-210ENST00000489108 COX7CP15954 63 aa4.35□□□□□ -1.71
USP48-210ENST00000489108 UQCR11O14957 56 aa4.24□□□□□ -1.73
USP48-210ENST00000489108 LINC01558Q9Y6Z2 57 aa4.24□□□□□ -1.73
USP48-210ENST00000489108 LCE1EQ5T753 118 aa4.2□□□□□ -1.74
USP48-210ENST00000489108 K7ERS5 55 aa4.12□□□□□ -1.75
USP48-210ENST00000489108 MIR22HGQ0VDD5 57 aa4.11□□□□□ -1.75
USP48-210ENST00000489108 LCE1BQ5T7P3 118 aa4.05□□□□□ -1.76
USP48-210ENST00000489108 RPS28P62857 69 aaKnown RBP4□□□□□ -1.77
USP48-210ENST00000489108 SVIPQ8NHG7 77 aa3.96□□□□□ -1.78
USP48-210ENST00000489108 PCP4P48539 62 aa3.91□□□□□ -1.78
USP48-210ENST00000489108 ATP5EP56381 51 aaPredicted RBP3.91□□□□□ -1.78
USP48-210ENST00000489108 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
USP48-210ENST00000489108 ANAPC13Q9BS18 74 aa3.85□□□□□ -1.79
USP48-210ENST00000489108 CCDC179H3BU77 68 aa3.84□□□□□ -1.79
USP48-210ENST00000489108 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
USP48-210ENST00000489108 CDC42SE1Q9NRR8 79 aa3.82□□□□□ -1.8
USP48-210ENST00000489108 Q1T7F1 81 aa3.8□□□□□ -1.8
USP48-210ENST00000489108 A0A0A0MQY5 61 aa3.74□□□□□ -1.81
USP48-210ENST00000489108 ROMO1P60602 79 aa3.74□□□□□ -1.81
USP48-210ENST00000489108 KRTAP5-11Q6L8G4 156 aa3.74□□□□□ -1.81
USP48-210ENST00000489108 PSPHP1O15172 72 aa3.71□□□□□ -1.82
USP48-210ENST00000489108 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
USP48-210ENST00000489108 TMEM258P61165 79 aa3.59□□□□□ -1.83
USP48-210ENST00000489108 PHGR1C9JFL3 82 aa3.58□□□□□ -1.84
USP48-210ENST00000489108 V9GYY9 64 aa3.54□□□□□ -1.84
USP48-210ENST00000489108 A6NED7 52 aa3.51□□□□□ -1.85
USP48-210ENST00000489108 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
USP48-210ENST00000489108 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.9
USP48-210ENST00000489108 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
USP48-210ENST00000489108 PRAC1Q96KF2 57 aa3.13□□□□□ -1.91
USP48-210ENST00000489108 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
USP48-210ENST00000489108 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
USP48-210ENST00000489108 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
USP48-210ENST00000489108 BRK1Q8WUW1 75 aa2.82□□□□□ -1.96
USP48-210ENST00000489108 KRTAP21-1Q3LI58 79 aa2.71□□□□□ -1.98
USP48-210ENST00000489108 PMAIP1Q13794 54 aa2.61□□□□□ -1.99
USP48-210ENST00000489108 PRO0628Q9UI54 55 aa2.36□□□□□ -2.03
USP48-210ENST00000489108 KTN1-AS1Q86SY8 53 aa2.3□□□□□ -2.04
USP48-210ENST00000489108 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
USP48-210ENST00000489108 LUZP6Q538Z0 58 aa2.1□□□□□ -2.07
USP48-210ENST00000489108 PRM1P04553 51 aa1.89□□□□□ -2.11
USP48-210ENST00000489108 INE1O15225 51 aa1.26□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 85.3 ms