RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 MUC12Q9UKN1 5478 aa5.52□□□□□ -1.53
MCF2L-229ENST00000488765 SYNE1Q8NF91 8797 aaKnown RBP5.5□□□□□ -1.53
MCF2L-229ENST00000488765 KRTAP12-4P60329 112 aa5.49□□□□□ -1.53
MCF2L-229ENST00000488765 LOC100996750A0A140TA64 210 aa5.45□□□□□ -1.54
MCF2L-229ENST00000488765 KRTAP19-7Q3SYF9 63 aa5.35□□□□□ -1.55
MCF2L-229ENST00000488765 KRTAP4-3Q9BYR4 195 aa5.33□□□□□ -1.56
MCF2L-229ENST00000488765 MACF1Q9UPN3 7388 aaKnown RBP5.28□□□□□ -1.56
MCF2L-229ENST00000488765 SYNE2Q8WXH0 6885 aaKnown RBP5.27□□□□□ -1.57
MCF2L-229ENST00000488765 MT1GP13640 62 aa5.23□□□□□ -1.57
MCF2L-229ENST00000488765 KRTAP4-9Q9BYQ8 210 aa5.23□□□□□ -1.57
MCF2L-229ENST00000488765 MT1LQ93083 61 aa5.22□□□□□ -1.57
MCF2L-229ENST00000488765 MT1EP04732 61 aa5.16□□□□□ -1.58
MCF2L-229ENST00000488765 KRTAP19-6Q3LI70 58 aa5.13□□□□□ -1.59
MCF2L-229ENST00000488765 MDN1Q9NU22 5596 aa5.08□□□□□ -1.6
MCF2L-229ENST00000488765 LCE3BQ5TA77 95 aa5.07□□□□□ -1.6
MCF2L-229ENST00000488765 SPRR2FQ96RM1 72 aa5.07□□□□□ -1.6
MCF2L-229ENST00000488765 KRTAP9-7A8MTY7 169 aa5.02□□□□□ -1.61
MCF2L-229ENST00000488765 LCE2DQ5TA82 110 aaPredicted RBP5.01□□□□□ -1.61
MCF2L-229ENST00000488765 KRTAP19-4Q3LI73 84 aa4.97□□□□□ -1.61
MCF2L-229ENST00000488765 PRM1P04553 51 aa4.95□□□□□ -1.62
MCF2L-229ENST00000488765 KRTAP9-2Q9BYQ4 174 aa4.91□□□□□ -1.62
MCF2L-229ENST00000488765 KRTAP19-3Q7Z4W3 81 aa4.87□□□□□ -1.63
MCF2L-229ENST00000488765 MT1MQ8N339 61 aa4.85□□□□□ -1.63
MCF2L-229ENST00000488765 KRTAP6-3Q3LI67 103 aa4.74□□□□□ -1.65
MCF2L-229ENST00000488765 LCE3DQ9BYE3 92 aa4.73□□□□□ -1.65
MCF2L-229ENST00000488765 KRTAP5-5Q701N2 237 aaPredicted RBP4.72□□□□□ -1.65
MCF2L-229ENST00000488765 LCE1AQ5T7P2 110 aa4.7□□□□□ -1.66
MCF2L-229ENST00000488765 KRTAP9-6A0A140TA67 174 aa4.68□□□□□ -1.66
MCF2L-229ENST00000488765 KRTAP2-2Q9BYT5 123 aa4.68□□□□□ -1.66
MCF2L-229ENST00000488765 LCE3EQ5T5B0 92 aa4.67□□□□□ -1.66
MCF2L-229ENST00000488765 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
MCF2L-229ENST00000488765 SPRR2EP22531 72 aa4.6□□□□□ -1.67
MCF2L-229ENST00000488765 SPRR2BP35325 72 aa4.6□□□□□ -1.67
MCF2L-229ENST00000488765 SPRR2AP35326 72 aa4.6□□□□□ -1.67
MCF2L-229ENST00000488765 KRTAP6-1Q3LI64 71 aa4.59□□□□□ -1.68
MCF2L-229ENST00000488765 KRTAP6-2Q3LI66 62 aa4.53□□□□□ -1.68
MCF2L-229ENST00000488765 LCE1EQ5T753 118 aa4.51□□□□□ -1.69
MCF2L-229ENST00000488765 MT1AP04731 61 aa4.45□□□□□ -1.7
MCF2L-229ENST00000488765 SPRR2DP22532 72 aa4.38□□□□□ -1.71
MCF2L-229ENST00000488765 KRTAP5-9P26371 169 aa4.33□□□□□ -1.72
MCF2L-229ENST00000488765 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.31□□□□□ -1.72
MCF2L-229ENST00000488765 LCE1DQ5T752 114 aa4.27□□□□□ -1.73
MCF2L-229ENST00000488765 MUC19Q7Z5P9 8384 aa4.2□□□□□ -1.74
MCF2L-229ENST00000488765 MT4P47944 62 aa4.07□□□□□ -1.76
MCF2L-229ENST00000488765 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
MCF2L-229ENST00000488765 NEBP20929 6669 aa4.02□□□□□ -1.77
MCF2L-229ENST00000488765 KRTAP4-6Q9BYQ5 205 aa3.95□□□□□ -1.78
MCF2L-229ENST00000488765 MT3P25713 68 aa3.89□□□□□ -1.79
MCF2L-229ENST00000488765 HMCN1Q96RW7 5635 aa3.83□□□□□ -1.8
MCF2L-229ENST00000488765 KRTAP4-11Q9BYQ6 195 aa3.8□□□□□ -1.8
MCF2L-229ENST00000488765 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
MCF2L-229ENST00000488765 KRTAP5-4Q6L8H1 288 aa3.64□□□□□ -1.83
MCF2L-229ENST00000488765 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
MCF2L-229ENST00000488765 MUC5ACP98088 5654 aa3.6□□□□□ -1.83
MCF2L-229ENST00000488765 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
MCF2L-229ENST00000488765 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
MCF2L-229ENST00000488765 KRTAP20-1Q3LI63 56 aa3.49□□□□□ -1.85
MCF2L-229ENST00000488765 KRTAP5-2Q701N4 177 aa3.34□□□□□ -1.87
MCF2L-229ENST00000488765 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.88
MCF2L-229ENST00000488765 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
MCF2L-229ENST00000488765 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
MCF2L-229ENST00000488765 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
MCF2L-229ENST00000488765 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
MCF2L-229ENST00000488765 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
MCF2L-229ENST00000488765 KRTAP4-2Q9BYR5 136 aa3□□□□□ -1.93
MCF2L-229ENST00000488765 KRTAP5-1Q6L8H4 278 aa3□□□□□ -1.93
MCF2L-229ENST00000488765 KRTAP9-9Q9BYP9 154 aa2.99□□□□□ -1.93
MCF2L-229ENST00000488765 KRTAP21-1Q3LI58 79 aa2.94□□□□□ -1.94
MCF2L-229ENST00000488765 KRTAP4-12Q9BQ66 201 aa2.89□□□□□ -1.95
MCF2L-229ENST00000488765 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
MCF2L-229ENST00000488765 GPR98Q8WXG9 6306 aa2.85□□□□□ -1.95
MCF2L-229ENST00000488765 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
MCF2L-229ENST00000488765 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.67□□□□□ -1.98
MCF2L-229ENST00000488765 KRTAP5-7Q6L8G8 165 aa2.65□□□□□ -1.98
MCF2L-229ENST00000488765 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
MCF2L-229ENST00000488765 KRTAP5-11Q6L8G4 156 aa2.46□□□□□ -2.02
MCF2L-229ENST00000488765 PHGR1C9JFL3 82 aa2.19□□□□□ -2.06
MCF2L-229ENST00000488765 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 9.2 ms