RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 FCGBPQ9Y6R7 5405 aaPredicted RBP4.45□□□□□ -1.7
HMGN1-216ENST00000486741 KRTAP19-6Q3LI70 58 aa4.44□□□□□ -1.7
HMGN1-216ENST00000486741 KRTAP4-3Q9BYR4 195 aa4.44□□□□□ -1.7
HMGN1-216ENST00000486741 LOC100996750A0A140TA64 210 aa4.38□□□□□ -1.71
HMGN1-216ENST00000486741 KRTAP19-3Q7Z4W3 81 aa4.38□□□□□ -1.71
HMGN1-216ENST00000486741 SPRR2EP22531 72 aa4.37□□□□□ -1.71
HMGN1-216ENST00000486741 SPRR2BP35325 72 aa4.37□□□□□ -1.71
HMGN1-216ENST00000486741 SPRR2AP35326 72 aa4.37□□□□□ -1.71
HMGN1-216ENST00000486741 KRTAP19-4Q3LI73 84 aa4.36□□□□□ -1.71
HMGN1-216ENST00000486741 LCE3BQ5TA77 95 aa4.36□□□□□ -1.71
HMGN1-216ENST00000486741 SSPOA2VEC9 5147 aa4.33□□□□□ -1.72
HMGN1-216ENST00000486741 KRTAP12-4P60329 112 aa4.33□□□□□ -1.72
HMGN1-216ENST00000486741 MUC12Q9UKN1 5478 aa4.3□□□□□ -1.72
HMGN1-216ENST00000486741 SYNE2Q8WXH0 6885 aaKnown RBP4.3□□□□□ -1.72
HMGN1-216ENST00000486741 KRTAP9-2Q9BYQ4 174 aa4.3□□□□□ -1.72
HMGN1-216ENST00000486741 MT1MQ8N339 61 aa4.29□□□□□ -1.72
HMGN1-216ENST00000486741 KRTAP9-6A8MVA2 160 aa4.28□□□□□ -1.72
HMGN1-216ENST00000486741 LCE2DQ5TA82 110 aaPredicted RBP4.2□□□□□ -1.74
HMGN1-216ENST00000486741 SPRR2DP22532 72 aa4.18□□□□□ -1.74
HMGN1-216ENST00000486741 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
HMGN1-216ENST00000486741 KRTAP2-3P0C7H8 128 aa4.01□□□□□ -1.77
HMGN1-216ENST00000486741 KRTAP4-9Q9BYQ8 210 aa4.01□□□□□ -1.77
HMGN1-216ENST00000486741 KRTAP2-4Q9BYR9 128 aa4.01□□□□□ -1.77
HMGN1-216ENST00000486741 KRTAP2-1Q9BYU5 128 aa4.01□□□□□ -1.77
HMGN1-216ENST00000486741 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
HMGN1-216ENST00000486741 LCE5AQ5TCM9 118 aa3.96□□□□□ -1.77
HMGN1-216ENST00000486741 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
HMGN1-216ENST00000486741 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
HMGN1-216ENST00000486741 KRTAP6-1Q3LI64 71 aa3.86□□□□□ -1.79
HMGN1-216ENST00000486741 KRTAP9-6A0A140TA67 174 aa3.85□□□□□ -1.79
HMGN1-216ENST00000486741 PRM1P04553 51 aa3.83□□□□□ -1.8
HMGN1-216ENST00000486741 MT4P47944 62 aa3.83□□□□□ -1.8
HMGN1-216ENST00000486741 MT1AP04731 61 aa3.83□□□□□ -1.8
HMGN1-216ENST00000486741 MDN1Q9NU22 5596 aa3.82□□□□□ -1.8
HMGN1-216ENST00000486741 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.77□□□□□ -1.81
HMGN1-216ENST00000486741 MT3P25713 68 aa3.73□□□□□ -1.81
HMGN1-216ENST00000486741 KRTAP6-3Q3LI67 103 aa3.69□□□□□ -1.82
HMGN1-216ENST00000486741 KRTAP9-7A8MTY7 169 aa3.67□□□□□ -1.82
HMGN1-216ENST00000486741 KRTAP6-2Q3LI66 62 aa3.64□□□□□ -1.83
HMGN1-216ENST00000486741 KRTAP5-9P26371 169 aa3.59□□□□□ -1.83
HMGN1-216ENST00000486741 KRTAP9-4Q9BYQ2 154 aa3.57□□□□□ -1.84
HMGN1-216ENST00000486741 LCE1DQ5T752 114 aa3.51□□□□□ -1.85
HMGN1-216ENST00000486741 LCE1BQ5T7P3 118 aa3.46□□□□□ -1.86
HMGN1-216ENST00000486741 MUC19Q7Z5P9 8384 aa3.45□□□□□ -1.86
HMGN1-216ENST00000486741 NEBP20929 6669 aa3.38□□□□□ -1.87
HMGN1-216ENST00000486741 KRTAP4-6Q9BYQ5 205 aa3.36□□□□□ -1.87
HMGN1-216ENST00000486741 KRTAP20-1Q3LI63 56 aa3.36□□□□□ -1.87
HMGN1-216ENST00000486741 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
HMGN1-216ENST00000486741 LCE4AQ5TA78 99 aa3.29□□□□□ -1.88
HMGN1-216ENST00000486741 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
HMGN1-216ENST00000486741 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
HMGN1-216ENST00000486741 LCE1EQ5T753 118 aa3.08□□□□□ -1.92
HMGN1-216ENST00000486741 MUC5ACP98088 5654 aa2.99□□□□□ -1.93
HMGN1-216ENST00000486741 HMCN1Q96RW7 5635 aa2.97□□□□□ -1.93
HMGN1-216ENST00000486741 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
HMGN1-216ENST00000486741 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
HMGN1-216ENST00000486741 GPR98Q8WXG9 6306 aa2.78□□□□□ -1.96
HMGN1-216ENST00000486741 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
HMGN1-216ENST00000486741 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
HMGN1-216ENST00000486741 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
HMGN1-216ENST00000486741 KRTAP5-3Q6L8H2 238 aa2.66□□□□□ -1.98
HMGN1-216ENST00000486741 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
HMGN1-216ENST00000486741 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.98
HMGN1-216ENST00000486741 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.98
HMGN1-216ENST00000486741 KRTAP9-9Q9BYP9 154 aa2.62□□□□□ -1.99
HMGN1-216ENST00000486741 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
HMGN1-216ENST00000486741 KRTAP5-8O75690 187 aa2.45□□□□□ -2.02
HMGN1-216ENST00000486741 KRTAP5-10Q6L8G5 202 aa2.45□□□□□ -2.02
HMGN1-216ENST00000486741 MUC5BQ9HC84 5762 aaPredicted RBP2.39□□□□□ -2.03
HMGN1-216ENST00000486741 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
HMGN1-216ENST00000486741 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
HMGN1-216ENST00000486741 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
HMGN1-216ENST00000486741 KRTAP5-11Q6L8G4 156 aa2.11□□□□□ -2.07
HMGN1-216ENST00000486741 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
HMGN1-216ENST00000486741 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
HMGN1-216ENST00000486741 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.12
HMGN1-216ENST00000486741 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
HMGN1-216ENST00000486741 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 6.3 ms