RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 TRAV22A0A0B4J277 110 aa1.98□□□□□ -2.09
UPF3A-205ENST00000479712 LOC101927531A0A1B0GV80 90 aa1.98□□□□□ -2.09
UPF3A-205ENST00000479712 ATOX1O00244 68 aa1.98□□□□□ -2.09
UPF3A-205ENST00000479712 LINC00643Q86TS7 51 aa1.98□□□□□ -2.09
UPF3A-205ENST00000479712 UQCRQO14949 82 aa1.97□□□□□ -2.09
UPF3A-205ENST00000479712 MT1BP07438 61 aa1.97□□□□□ -2.09
UPF3A-205ENST00000479712 Q1T7F1 81 aa1.97□□□□□ -2.09
UPF3A-205ENST00000479712 CYP4F30PQ9H0H9 118 aa1.97□□□□□ -2.09
UPF3A-205ENST00000479712 A0A1B0GV90 55 aa1.96□□□□□ -2.1
UPF3A-205ENST00000479712 CSAG1Q6PB30 78 aa1.96□□□□□ -2.1
UPF3A-205ENST00000479712 S4R3F8 94 aa1.96□□□□□ -2.1
UPF3A-205ENST00000479712 J3QR89 54 aa1.95□□□□□ -2.1
UPF3A-205ENST00000479712 H0Y9P7 68 aa1.93□□□□□ -2.1
UPF3A-205ENST00000479712 LCA10Q71F78 164 aa1.93□□□□□ -2.1
UPF3A-205ENST00000479712 A0A087WVE0 104 aa1.92□□□□□ -2.1
UPF3A-205ENST00000479712 H0YAA0 97 aa1.92□□□□□ -2.1
UPF3A-205ENST00000479712 LINC01554Q52M75 96 aa1.92□□□□□ -2.1
UPF3A-205ENST00000479712 SPRR2GQ9BYE4 73 aa1.92□□□□□ -2.1
UPF3A-205ENST00000479712 CRIPTQ9P021 101 aa1.92□□□□□ -2.1
UPF3A-205ENST00000479712 KLKP1Q107X0 134 aa1.91□□□□□ -2.1
UPF3A-205ENST00000479712 KRTAP19-8Q3LI54 63 aa1.91□□□□□ -2.1
UPF3A-205ENST00000479712 IMUPQ9GZP8 106 aa1.91□□□□□ -2.1
UPF3A-205ENST00000479712 FAM236AA0A1B0GUQ0 79 aa1.9□□□□□ -2.11
UPF3A-205ENST00000479712 FAM236BA0A1B0GV22 79 aa1.9□□□□□ -2.11
UPF3A-205ENST00000479712 NDUFC1O43677 76 aa1.9□□□□□ -2.11
UPF3A-205ENST00000479712 LINC00208Q96KT6 92 aa1.89□□□□□ -2.11
UPF3A-205ENST00000479712 K7ERU9 68 aa1.88□□□□□ -2.11
UPF3A-205ENST00000479712 Q5VV11 94 aa1.88□□□□□ -2.11
UPF3A-205ENST00000479712 SMIM20Q8N5G0 67 aa1.88□□□□□ -2.11
UPF3A-205ENST00000479712 SCGB1A1P11684 91 aa1.87□□□□□ -2.11
UPF3A-205ENST00000479712 DMAC1Q96GE9 116 aa1.87□□□□□ -2.11
UPF3A-205ENST00000479712 C20orf197Q8N268 126 aa1.85□□□□□ -2.11
UPF3A-205ENST00000479712 CYSTM1Q9H1C7 97 aa1.84□□□□□ -2.11
UPF3A-205ENST00000479712 MT-ATP8P03928 68 aa1.83□□□□□ -2.12
UPF3A-205ENST00000479712 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
UPF3A-205ENST00000479712 ACYP2P14621 99 aa1.82□□□□□ -2.12
UPF3A-205ENST00000479712 SPTSSBQ8NFR3 76 aa1.82□□□□□ -2.12
UPF3A-205ENST00000479712 KRTAP20-2Q3LI61 65 aa1.8□□□□□ -2.12
UPF3A-205ENST00000479712 SERP2Q8N6R1 65 aa1.79□□□□□ -2.12
UPF3A-205ENST00000479712 PLAC4Q8WY50 150 aa1.78□□□□□ -2.12
UPF3A-205ENST00000479712 M0QZ58 72 aa1.77□□□□□ -2.13
UPF3A-205ENST00000479712 CHKB-CPT1BH3BT56 60 aa1.76□□□□□ -2.13
UPF3A-205ENST00000479712 MT1XP80297 61 aa1.76□□□□□ -2.13
UPF3A-205ENST00000479712 SNURFQ9Y675 71 aa1.76□□□□□ -2.13
UPF3A-205ENST00000479712 SYNE1Q8NF91 8797 aaKnown RBP1.75□□□□□ -2.13
UPF3A-205ENST00000479712 COX7CP15954 63 aa1.74□□□□□ -2.13
UPF3A-205ENST00000479712 H7BZZ5 65 aa1.7□□□□□ -2.14
UPF3A-205ENST00000479712 SERP1Q9Y6X1 66 aa1.68□□□□□ -2.14
UPF3A-205ENST00000479712 ATP5EP56381 51 aaPredicted RBP1.66□□□□□ -2.14
UPF3A-205ENST00000479712 ROMO1P60602 79 aa1.64□□□□□ -2.15
UPF3A-205ENST00000479712 KRTAP19-3Q7Z4W3 81 aa1.64□□□□□ -2.15
UPF3A-205ENST00000479712 A0A1B0GU69 56 aa1.63□□□□□ -2.15
UPF3A-205ENST00000479712 CCDC179H3BU77 68 aa1.63□□□□□ -2.15
UPF3A-205ENST00000479712 SPATA8Q6RVD6 105 aa1.61□□□□□ -2.15
UPF3A-205ENST00000479712 PRR15LQ9BU68 103 aa1.61□□□□□ -2.15
UPF3A-205ENST00000479712 CDC42SE1Q9NRR8 79 aa1.61□□□□□ -2.15
UPF3A-205ENST00000479712 A0A0D9SG42 100 aa1.6□□□□□ -2.15
UPF3A-205ENST00000479712 LINC01558Q9Y6Z2 57 aa1.6□□□□□ -2.15
UPF3A-205ENST00000479712 INE1O15225 51 aa1.58□□□□□ -2.16
UPF3A-205ENST00000479712 KRTAP19-7Q3SYF9 63 aa1.58□□□□□ -2.16
UPF3A-205ENST00000479712 MT1EP04732 61 aa1.56□□□□□ -2.16
UPF3A-205ENST00000479712 UQCR11O14957 56 aa1.55□□□□□ -2.16
UPF3A-205ENST00000479712 TNP1P09430 55 aa1.55□□□□□ -2.16
UPF3A-205ENST00000479712 MT1GP13640 62 aa1.54□□□□□ -2.16
UPF3A-205ENST00000479712 C10orf95Q9H7T3 257 aa1.53□□□□□ -2.16
UPF3A-205ENST00000479712 KRTAP19-5Q3LI72 72 aa1.52□□□□□ -2.17
UPF3A-205ENST00000479712 MT1MQ8N339 61 aa1.51□□□□□ -2.17
UPF3A-205ENST00000479712 MIR22HGQ0VDD5 57 aa1.5□□□□□ -2.17
UPF3A-205ENST00000479712 MT1LQ93083 61 aa1.5□□□□□ -2.17
UPF3A-205ENST00000479712 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
UPF3A-205ENST00000479712 RPS28P62857 69 aaKnown RBP1.46□□□□□ -2.18
UPF3A-205ENST00000479712 BRK1Q8WUW1 75 aa1.3□□□□□ -2.2
UPF3A-205ENST00000479712 MT1AP04731 61 aa1.29□□□□□ -2.2
UPF3A-205ENST00000479712 KRTAP6-2Q3LI66 62 aa1.27□□□□□ -2.21
UPF3A-205ENST00000479712 KRTAP6-1Q3LI64 71 aa1.25□□□□□ -2.21
UPF3A-205ENST00000479712 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
UPF3A-205ENST00000479712 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
UPF3A-205ENST00000479712 PRM1P04553 51 aa0.69□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 10.3 ms