RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 COX8AP10176 69 aa1.19□□□□□ -2.22
VPS13D-207ENST00000476169 C9orf92A6NGG3 77 aa1.18□□□□□ -2.22
VPS13D-207ENST00000476169 SPINK1P00995 79 aa1.17□□□□□ -2.22
VPS13D-207ENST00000476169 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
VPS13D-207ENST00000476169 RPS29P62273 56 aaKnown RBP1.16□□□□□ -2.22
VPS13D-207ENST00000476169 MT1HP80294 61 aa1.16□□□□□ -2.22
VPS13D-207ENST00000476169 NDUFB1O75438 58 aa1.14□□□□□ -2.23
VPS13D-207ENST00000476169 ATP5EP2Q5VTU8 51 aa1.14□□□□□ -2.23
VPS13D-207ENST00000476169 CRIPTQ9P021 101 aa1.14□□□□□ -2.23
VPS13D-207ENST00000476169 SSPOA2VEC9 5147 aa1.14□□□□□ -2.23
VPS13D-207ENST00000476169 USH2AO75445 5202 aa1.13□□□□□ -2.23
VPS13D-207ENST00000476169 FSIP2Q5CZC0 6907 aa1.12□□□□□ -2.23
VPS13D-207ENST00000476169 H0YGX0 51 aa1.12□□□□□ -2.23
VPS13D-207ENST00000476169 K7EQZ3 153 aa1.09□□□□□ -2.23
VPS13D-207ENST00000476169 MT2AP02795 61 aa1.09□□□□□ -2.23
VPS13D-207ENST00000476169 MT1FP04733 61 aa1.09□□□□□ -2.23
VPS13D-207ENST00000476169 ATXN8Q156A1 80 aa1.09□□□□□ -2.23
VPS13D-207ENST00000476169 CRCT1Q9UGL9 99 aa1.09□□□□□ -2.23
VPS13D-207ENST00000476169 NEBP20929 6669 aa1.08□□□□□ -2.24
VPS13D-207ENST00000476169 COX6B2Q6YFQ2 88 aa1.08□□□□□ -2.24
VPS13D-207ENST00000476169 FLGP20930 4061 aaPredicted RBP1.07□□□□□ -2.24
VPS13D-207ENST00000476169 MMP24-AS1A0A0U1RRL7 71 aa1.07□□□□□ -2.24
VPS13D-207ENST00000476169 M0R2T5 61 aa1.07□□□□□ -2.24
VPS13D-207ENST00000476169 MACF1Q9UPN3 7388 aaKnown RBP1.07□□□□□ -2.24
VPS13D-207ENST00000476169 SYNE2Q8WXH0 6885 aaKnown RBP1.06□□□□□ -2.24
VPS13D-207ENST00000476169 WFDC13Q8IUB5 93 aa1.06□□□□□ -2.24
VPS13D-207ENST00000476169 MRPL34Q9BQ48 92 aaKnown RBP1.05□□□□□ -2.24
VPS13D-207ENST00000476169 FCGBPQ9Y6R7 5405 aaPredicted RBP1.04□□□□□ -2.24
VPS13D-207ENST00000476169 NREPQ16612 68 aa1.04□□□□□ -2.24
VPS13D-207ENST00000476169 MT1BP07438 61 aa1.01□□□□□ -2.25
VPS13D-207ENST00000476169 H1FX-AS1Q4G0G2 97 aa1.01□□□□□ -2.25
VPS13D-207ENST00000476169 KRTAP19-6Q3LI70 58 aa1□□□□□ -2.25
VPS13D-207ENST00000476169 HMCN1Q96RW7 5635 aa1□□□□□ -2.25
VPS13D-207ENST00000476169 UBL5Q9BZL1 73 aa0.99□□□□□ -2.25
VPS13D-207ENST00000476169 KRTAP19-8Q3LI54 63 aa0.97□□□□□ -2.25
VPS13D-207ENST00000476169 KRTAP19-3Q7Z4W3 81 aa0.96□□□□□ -2.26
VPS13D-207ENST00000476169 SPRR2GQ9BYE4 73 aa0.96□□□□□ -2.26
VPS13D-207ENST00000476169 S4R3F8 94 aa0.96□□□□□ -2.26
VPS13D-207ENST00000476169 MUC12Q9UKN1 5478 aa0.95□□□□□ -2.26
VPS13D-207ENST00000476169 KMT2DO14686 5537 aa0.93□□□□□ -2.26
VPS13D-207ENST00000476169 MT1XP80297 61 aa0.93□□□□□ -2.26
VPS13D-207ENST00000476169 MDN1Q9NU22 5596 aa0.93□□□□□ -2.26
VPS13D-207ENST00000476169 GPR98Q8WXG9 6306 aa0.9□□□□□ -2.27
VPS13D-207ENST00000476169 H0YAA0 97 aa0.9□□□□□ -2.27
VPS13D-207ENST00000476169 M0QZ58 72 aa0.89□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP2-3P0C7H8 128 aa0.88□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP2-4Q9BYR9 128 aa0.88□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP20-1Q3LI63 56 aa0.87□□□□□ -2.27
VPS13D-207ENST00000476169 SPRR2FQ96RM1 72 aa0.87□□□□□ -2.27
VPS13D-207ENST00000476169 SPRR2EP22531 72 aa0.86□□□□□ -2.27
VPS13D-207ENST00000476169 SPRR2BP35325 72 aa0.86□□□□□ -2.27
VPS13D-207ENST00000476169 SPRR2AP35326 72 aa0.86□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP8-1Q8IUC2 63 aa0.86□□□□□ -2.27
VPS13D-207ENST00000476169 KRTAP19-7Q3SYF9 63 aa0.84□□□□□ -2.27
VPS13D-207ENST00000476169 MT1EP04732 61 aa0.83□□□□□ -2.28
VPS13D-207ENST00000476169 SPRR2DP22532 72 aa0.83□□□□□ -2.28
VPS13D-207ENST00000476169 SYNE1Q8NF91 8797 aaKnown RBP0.82□□□□□ -2.28
VPS13D-207ENST00000476169 DSTQ03001 7570 aaKnown RBP0.82□□□□□ -2.28
VPS13D-207ENST00000476169 KRTAP19-5Q3LI72 72 aa0.81□□□□□ -2.28
VPS13D-207ENST00000476169 AHNAK2Q8IVF2 5795 aa0.8□□□□□ -2.28
VPS13D-207ENST00000476169 MT1LQ93083 61 aa0.79□□□□□ -2.28
VPS13D-207ENST00000476169 MT1MQ8N339 61 aa0.78□□□□□ -2.28
VPS13D-207ENST00000476169 MT1GP13640 62 aa0.75□□□□□ -2.29
VPS13D-207ENST00000476169 MT4P47944 62 aa0.75□□□□□ -2.29
VPS13D-207ENST00000476169 MUC5BQ9HC84 5762 aaPredicted RBP0.74□□□□□ -2.29
VPS13D-207ENST00000476169 TNP1P09430 55 aa0.73□□□□□ -2.29
VPS13D-207ENST00000476169 AHNAKQ09666 5890 aaKnown RBP0.7□□□□□ -2.3
VPS13D-207ENST00000476169 KRTAP20-2Q3LI61 65 aa0.69□□□□□ -2.3
VPS13D-207ENST00000476169 KRTAP5-10Q6L8G5 202 aa0.69□□□□□ -2.3
VPS13D-207ENST00000476169 KRTAP6-1Q3LI64 71 aa0.67□□□□□ -2.3
VPS13D-207ENST00000476169 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
VPS13D-207ENST00000476169 MT1AP04731 61 aa0.66□□□□□ -2.3
VPS13D-207ENST00000476169 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
VPS13D-207ENST00000476169 KRTAP6-2Q3LI66 62 aa0.64□□□□□ -2.31
VPS13D-207ENST00000476169 KRTAP21-1Q3LI58 79 aa0.63□□□□□ -2.31
VPS13D-207ENST00000476169 PRM1P04553 51 aa0.61□□□□□ -2.31
VPS13D-207ENST00000476169 PHGR1C9JFL3 82 aa0.44□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 6.5 ms