RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 KRTAP4-3Q9BYR4 195 aa4.36□□□□□ -1.71
SKA3-206ENST00000475251 SPINT4Q6UDR6 99 aa4.34□□□□□ -1.71
SKA3-206ENST00000475251 SMIM20Q8N5G0 67 aa4.32□□□□□ -1.72
SKA3-206ENST00000475251 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
SKA3-206ENST00000475251 J3QR89 54 aa4.3□□□□□ -1.72
SKA3-206ENST00000475251 SEC61GP60059 68 aa4.3□□□□□ -1.72
SKA3-206ENST00000475251 SERP1Q9Y6X1 66 aa4.29□□□□□ -1.72
SKA3-206ENST00000475251 KRTAP20-2Q3LI61 65 aa4.28□□□□□ -1.72
SKA3-206ENST00000475251 C10orf95Q9H7T3 257 aa4.28□□□□□ -1.72
SKA3-206ENST00000475251 SPANXA2-OT1Q8N9U9 137 aa4.27□□□□□ -1.73
SKA3-206ENST00000475251 SPATA8Q6RVD6 105 aa4.25□□□□□ -1.73
SKA3-206ENST00000475251 KRTAP12-1P59990 96 aa4.24□□□□□ -1.73
SKA3-206ENST00000475251 LCE3AQ5TA76 89 aa4.23□□□□□ -1.73
SKA3-206ENST00000475251 SNURFQ9Y675 71 aa4.22□□□□□ -1.73
SKA3-206ENST00000475251 A0A1B0GU33 70 aa4.21□□□□□ -1.74
SKA3-206ENST00000475251 TNP1P09430 55 aa4.2□□□□□ -1.74
SKA3-206ENST00000475251 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
SKA3-206ENST00000475251 KRTAP5-5Q701N2 237 aaPredicted RBP4.16□□□□□ -1.74
SKA3-206ENST00000475251 COA5Q86WW8 74 aa4.15□□□□□ -1.75
SKA3-206ENST00000475251 SMIM26A0A096LP01 95 aa4.12□□□□□ -1.75
SKA3-206ENST00000475251 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
SKA3-206ENST00000475251 A0A1B0GV90 55 aa4.09□□□□□ -1.75
SKA3-206ENST00000475251 LCE1FQ5T754 118 aa4.07□□□□□ -1.76
SKA3-206ENST00000475251 SYNE1Q8NF91 8797 aaKnown RBP4.07□□□□□ -1.76
SKA3-206ENST00000475251 A8MU10 97 aa4□□□□□ -1.77
SKA3-206ENST00000475251 SERP2Q8N6R1 65 aa4□□□□□ -1.77
SKA3-206ENST00000475251 A0A1B0GU69 56 aa3.99□□□□□ -1.77
SKA3-206ENST00000475251 KRTAP5-1Q6L8H4 278 aa3.95□□□□□ -1.78
SKA3-206ENST00000475251 KRTAP9-6A8MVA2 160 aa3.94□□□□□ -1.78
SKA3-206ENST00000475251 K7ERU9 68 aa3.92□□□□□ -1.78
SKA3-206ENST00000475251 AHNAKQ09666 5890 aaKnown RBP3.9□□□□□ -1.79
SKA3-206ENST00000475251 NDUFAF8A1L188 74 aa3.89□□□□□ -1.79
SKA3-206ENST00000475251 KRTAP5-2Q701N4 177 aa3.88□□□□□ -1.79
SKA3-206ENST00000475251 PRAC1Q96KF2 57 aa3.88□□□□□ -1.79
SKA3-206ENST00000475251 MUC5ACP98088 5654 aa3.88□□□□□ -1.79
SKA3-206ENST00000475251 KRTAP5-8O75690 187 aa3.86□□□□□ -1.79
SKA3-206ENST00000475251 MUC5BQ9HC84 5762 aaPredicted RBP3.82□□□□□ -1.8
SKA3-206ENST00000475251 LCE3CQ5T5A8 94 aa3.82□□□□□ -1.8
SKA3-206ENST00000475251 PRR15LQ9BU68 103 aa3.8□□□□□ -1.8
SKA3-206ENST00000475251 H7BZZ5 65 aa3.79□□□□□ -1.8
SKA3-206ENST00000475251 MT1AP04731 61 aa3.79□□□□□ -1.8
SKA3-206ENST00000475251 KRTAP4-4Q9BYR3 166 aa3.79□□□□□ -1.8
SKA3-206ENST00000475251 KRTAP25-1Q3LHN0 102 aa3.78□□□□□ -1.8
SKA3-206ENST00000475251 COX7CP15954 63 aa3.77□□□□□ -1.81
SKA3-206ENST00000475251 KRTAP6-1Q3LI64 71 aa3.75□□□□□ -1.81
SKA3-206ENST00000475251 OBSCNQ5VST9 7968 aa3.74□□□□□ -1.81
SKA3-206ENST00000475251 KRTAP6-2Q3LI66 62 aa3.67□□□□□ -1.82
SKA3-206ENST00000475251 UQCR11O14957 56 aa3.63□□□□□ -1.83
SKA3-206ENST00000475251 LINC01558Q9Y6Z2 57 aa3.6□□□□□ -1.83
SKA3-206ENST00000475251 K7ERS5 55 aa3.57□□□□□ -1.84
SKA3-206ENST00000475251 ATP5EP56381 51 aaPredicted RBP3.51□□□□□ -1.85
SKA3-206ENST00000475251 MIR22HGQ0VDD5 57 aa3.5□□□□□ -1.85
SKA3-206ENST00000475251 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
SKA3-206ENST00000475251 ANAPC13Q9BS18 74 aa3.43□□□□□ -1.86
SKA3-206ENST00000475251 RPS28P62857 69 aaKnown RBP3.38□□□□□ -1.87
SKA3-206ENST00000475251 CCDC179H3BU77 68 aa3.33□□□□□ -1.88
SKA3-206ENST00000475251 CDC42SE1Q9NRR8 79 aa3.3□□□□□ -1.88
SKA3-206ENST00000475251 TMEM258P61165 79 aa3.25□□□□□ -1.89
SKA3-206ENST00000475251 Q1T7F1 81 aa3.23□□□□□ -1.89
SKA3-206ENST00000475251 V9GYY9 64 aa3.2□□□□□ -1.9
SKA3-206ENST00000475251 PSPHP1O15172 72 aa3.19□□□□□ -1.9
SKA3-206ENST00000475251 ROMO1P60602 79 aa3.19□□□□□ -1.9
SKA3-206ENST00000475251 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
SKA3-206ENST00000475251 A6NED7 52 aa3.09□□□□□ -1.91
SKA3-206ENST00000475251 LCE1CQ5T751 118 aa3.06□□□□□ -1.92
SKA3-206ENST00000475251 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
SKA3-206ENST00000475251 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
SKA3-206ENST00000475251 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
SKA3-206ENST00000475251 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
SKA3-206ENST00000475251 BRK1Q8WUW1 75 aa2.24□□□□□ -2.05
SKA3-206ENST00000475251 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
SKA3-206ENST00000475251 PMAIP1Q13794 54 aa2.04□□□□□ -2.08
SKA3-206ENST00000475251 LUZP6Q538Z0 58 aa1.89□□□□□ -2.11
SKA3-206ENST00000475251 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
SKA3-206ENST00000475251 PRM1P04553 51 aa1.59□□□□□ -2.15
SKA3-206ENST00000475251 KTN1-AS1Q86SY8 53 aa1.54□□□□□ -2.16
SKA3-206ENST00000475251 PRO0628Q9UI54 55 aa1.48□□□□□ -2.17
SKA3-206ENST00000475251 INE1O15225 51 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 7 ms