RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PRR15LQ9BU68 103 aa6.53□□□□□ -1.36
UPF3A-203ENST00000474056 DSTQ03001 7570 aaKnown RBP6.52□□□□□ -1.37
UPF3A-203ENST00000474056 LINC01558Q9Y6Z2 57 aa6.51□□□□□ -1.37
UPF3A-203ENST00000474056 KRTAP4-11Q9BYQ6 195 aa6.5□□□□□ -1.37
UPF3A-203ENST00000474056 C10orf95Q9H7T3 257 aa6.5□□□□□ -1.37
UPF3A-203ENST00000474056 MT1GP13640 62 aa6.45□□□□□ -1.38
UPF3A-203ENST00000474056 TNP1P09430 55 aa6.44□□□□□ -1.38
UPF3A-203ENST00000474056 TMEM258P61165 79 aa6.44□□□□□ -1.38
UPF3A-203ENST00000474056 LCE3AQ5TA76 89 aa6.44□□□□□ -1.38
UPF3A-203ENST00000474056 MT1LQ93083 61 aa6.4□□□□□ -1.38
UPF3A-203ENST00000474056 PP632Q6XCG6 107 aa6.38□□□□□ -1.39
UPF3A-203ENST00000474056 MT1MQ8N339 61 aa6.37□□□□□ -1.39
UPF3A-203ENST00000474056 UQCR11O14957 56 aa6.33□□□□□ -1.4
UPF3A-203ENST00000474056 KRTAP4-3Q9BYR4 195 aa6.24□□□□□ -1.41
UPF3A-203ENST00000474056 KRTAP23-1A1A580 65 aa6.23□□□□□ -1.41
UPF3A-203ENST00000474056 MIR22HGQ0VDD5 57 aa6.19□□□□□ -1.42
UPF3A-203ENST00000474056 KRTAP12-3P60328 96 aa6.17□□□□□ -1.42
UPF3A-203ENST00000474056 MT4P47944 62 aa6.1□□□□□ -1.43
UPF3A-203ENST00000474056 PSPHP1O15172 72 aa6.09□□□□□ -1.43
UPF3A-203ENST00000474056 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
UPF3A-203ENST00000474056 V9GYY9 64 aa6.07□□□□□ -1.44
UPF3A-203ENST00000474056 HMCN1Q96RW7 5635 aa6.06□□□□□ -1.44
UPF3A-203ENST00000474056 Q1T7F1 81 aa6.05□□□□□ -1.44
UPF3A-203ENST00000474056 KRTAP5-4Q6L8H1 288 aa6.05□□□□□ -1.44
UPF3A-203ENST00000474056 K7ERS5 55 aa6.04□□□□□ -1.44
UPF3A-203ENST00000474056 GPR98Q8WXG9 6306 aa5.97□□□□□ -1.45
UPF3A-203ENST00000474056 A6NED7 52 aa5.87□□□□□ -1.47
UPF3A-203ENST00000474056 KRTAP5-3Q6L8H2 238 aa5.83□□□□□ -1.48
UPF3A-203ENST00000474056 KRTAP5-5Q701N2 237 aaPredicted RBP5.83□□□□□ -1.48
UPF3A-203ENST00000474056 AHNAK2Q8IVF2 5795 aa5.82□□□□□ -1.48
UPF3A-203ENST00000474056 PCP4P48539 62 aa5.76□□□□□ -1.49
UPF3A-203ENST00000474056 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
UPF3A-203ENST00000474056 CDC42SE1Q9NRR8 79 aa5.75□□□□□ -1.49
UPF3A-203ENST00000474056 KRTAP20-2Q3LI61 65 aa5.72□□□□□ -1.49
UPF3A-203ENST00000474056 KRTAP5-10Q6L8G5 202 aa5.72□□□□□ -1.49
UPF3A-203ENST00000474056 RPS28P62857 69 aaKnown RBP5.69□□□□□ -1.5
UPF3A-203ENST00000474056 LCE3CQ5T5A8 94 aa5.68□□□□□ -1.5
UPF3A-203ENST00000474056 SPRR5A0A1B0GTR4 108 aa5.66□□□□□ -1.5
UPF3A-203ENST00000474056 ROMO1P60602 79 aa5.66□□□□□ -1.5
UPF3A-203ENST00000474056 SYNE1Q8NF91 8797 aaKnown RBP5.66□□□□□ -1.5
UPF3A-203ENST00000474056 KRTAP12-4P60329 112 aa5.64□□□□□ -1.51
UPF3A-203ENST00000474056 A0A0A0MQY5 61 aa5.59□□□□□ -1.51
UPF3A-203ENST00000474056 KRTAP5-7Q6L8G8 165 aa5.49□□□□□ -1.53
UPF3A-203ENST00000474056 MT1AP04731 61 aa5.44□□□□□ -1.54
UPF3A-203ENST00000474056 KRTAP6-1Q3LI64 71 aa5.42□□□□□ -1.54
UPF3A-203ENST00000474056 KRTAP9-6A8MVA2 160 aa5.4□□□□□ -1.54
UPF3A-203ENST00000474056 KRTAP5-2Q701N4 177 aa5.32□□□□□ -1.56
UPF3A-203ENST00000474056 KRTAP6-2Q3LI66 62 aa5.16□□□□□ -1.58
UPF3A-203ENST00000474056 KRTAP5-8O75690 187 aa5.05□□□□□ -1.6
UPF3A-203ENST00000474056 BRK1Q8WUW1 75 aa5.02□□□□□ -1.61
UPF3A-203ENST00000474056 OBSCNQ5VST9 7968 aa4.97□□□□□ -1.61
UPF3A-203ENST00000474056 MT3P25713 68 aa4.95□□□□□ -1.62
UPF3A-203ENST00000474056 MUC5BQ9HC84 5762 aaPredicted RBP4.82□□□□□ -1.64
UPF3A-203ENST00000474056 KRTAP5-1Q6L8H4 278 aa4.76□□□□□ -1.65
UPF3A-203ENST00000474056 MUC5ACP98088 5654 aa4.71□□□□□ -1.65
UPF3A-203ENST00000474056 AHNAKQ09666 5890 aaKnown RBP4.71□□□□□ -1.66
UPF3A-203ENST00000474056 PMAIP1Q13794 54 aa4.69□□□□□ -1.66
UPF3A-203ENST00000474056 PRAC1Q96KF2 57 aa4.6□□□□□ -1.67
UPF3A-203ENST00000474056 LCE1EQ5T753 118 aa4.53□□□□□ -1.68
UPF3A-203ENST00000474056 PRO0628Q9UI54 55 aa4.51□□□□□ -1.69
UPF3A-203ENST00000474056 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.43□□□□□ -1.7
UPF3A-203ENST00000474056 KRTAP5-11Q6L8G4 156 aa4.4□□□□□ -1.71
UPF3A-203ENST00000474056 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
UPF3A-203ENST00000474056 KTN1-AS1Q86SY8 53 aa4.26□□□□□ -1.73
UPF3A-203ENST00000474056 NDUFAF8A1L188 74 aa4.24□□□□□ -1.73
UPF3A-203ENST00000474056 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
UPF3A-203ENST00000474056 LCE3DQ9BYE3 92 aa4.09□□□□□ -1.75
UPF3A-203ENST00000474056 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
UPF3A-203ENST00000474056 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
UPF3A-203ENST00000474056 LUZP6Q538Z0 58 aa3.81□□□□□ -1.8
UPF3A-203ENST00000474056 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
UPF3A-203ENST00000474056 KRTAP21-2Q3LI59 83 aa3.56□□□□□ -1.84
UPF3A-203ENST00000474056 PHGR1C9JFL3 82 aa3.32□□□□□ -1.88
UPF3A-203ENST00000474056 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
UPF3A-203ENST00000474056 PRM1P04553 51 aa2.91□□□□□ -1.94
UPF3A-203ENST00000474056 INE1O15225 51 aa2.63□□□□□ -1.99
UPF3A-203ENST00000474056 KRTAP21-1Q3LI58 79 aa2.51□□□□□ -2.01
UPF3A-203ENST00000474056 MUC16Q8WXI7 14507 aa2.18□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 7 ms