RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 KRTAP6-3Q3LI67 103 aa2.66□□□□□ -1.98
CD47-204ENST00000471694 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.65□□□□□ -1.99
CD47-204ENST00000471694 RYR2Q92736 4967 aa2.64□□□□□ -1.99
CD47-204ENST00000471694 KRTAP4-9Q9BYQ8 210 aa2.63□□□□□ -1.99
CD47-204ENST00000471694 LOC100996750A0A140TA64 210 aa2.62□□□□□ -1.99
CD47-204ENST00000471694 KRTAP4-3Q9BYR4 195 aa2.61□□□□□ -1.99
CD47-204ENST00000471694 KRTAP2-2Q9BYT5 123 aa2.6□□□□□ -1.99
CD47-204ENST00000471694 KRTAP2-1Q9BYU5 128 aa2.6□□□□□ -1.99
CD47-204ENST00000471694 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
CD47-204ENST00000471694 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
CD47-204ENST00000471694 LCE1FQ5T754 118 aa2.59□□□□□ -1.99
CD47-204ENST00000471694 LCE1AQ5T7P2 110 aa2.59□□□□□ -1.99
CD47-204ENST00000471694 TNXBP22105 4242 aa2.58□□□□□ -2
CD47-204ENST00000471694 LCE2AQ5TA79 106 aaPredicted RBP2.56□□□□□ -2
CD47-204ENST00000471694 LCE4AQ5TA78 99 aa2.55□□□□□ -2
CD47-204ENST00000471694 LRP2P98164 4655 aa2.54□□□□□ -2
CD47-204ENST00000471694 KRTAP19-2Q3LHN2 52 aa2.53□□□□□ -2
CD47-204ENST00000471694 PCLOQ9Y6V0 5065 aa2.52□□□□□ -2.01
CD47-204ENST00000471694 PRM1P04553 51 aa2.51□□□□□ -2.01
CD47-204ENST00000471694 KIAA1109Q2LD37 5005 aa2.51□□□□□ -2.01
CD47-204ENST00000471694 FLGP20930 4061 aaPredicted RBP2.49□□□□□ -2.01
CD47-204ENST00000471694 MT1AP04731 61 aa2.48□□□□□ -2.01
CD47-204ENST00000471694 SYNE2Q8WXH0 6885 aaKnown RBP2.44□□□□□ -2.02
CD47-204ENST00000471694 HYDINQ4G0P3 5121 aa2.43□□□□□ -2.02
CD47-204ENST00000471694 KRTAP9-9Q9BYP9 154 aa2.43□□□□□ -2.02
CD47-204ENST00000471694 KRTAP6-2Q3LI66 62 aa2.4□□□□□ -2.03
CD47-204ENST00000471694 EPPK1P58107 5090 aaKnown RBP2.35□□□□□ -2.03
CD47-204ENST00000471694 KRTAP9-4Q9BYQ2 154 aa2.34□□□□□ -2.03
CD47-204ENST00000471694 KRTAP19-7Q3SYF9 63 aa2.33□□□□□ -2.04
CD47-204ENST00000471694 KMT2CQ8NEZ4 4911 aaKnown RBP2.33□□□□□ -2.04
CD47-204ENST00000471694 KRTAP6-1Q3LI64 71 aa2.3□□□□□ -2.04
CD47-204ENST00000471694 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
CD47-204ENST00000471694 ABCA13Q86UQ4 5058 aa2.2□□□□□ -2.06
CD47-204ENST00000471694 FAT4Q6V0I7 4981 aa2.18□□□□□ -2.06
CD47-204ENST00000471694 HMCN2Q8NDA2 5059 aa2.14□□□□□ -2.07
CD47-204ENST00000471694 RNF213Q63HN8 5207 aa2.13□□□□□ -2.07
CD47-204ENST00000471694 UBR4Q5T4S7 5183 aa2.11□□□□□ -2.07
CD47-204ENST00000471694 MUC2Q02817 5179 aa2.1□□□□□ -2.07
CD47-204ENST00000471694 KRTAP20-2Q3LI61 65 aa2.06□□□□□ -2.08
CD47-204ENST00000471694 KRTAP4-6Q9BYQ5 205 aa2.05□□□□□ -2.08
CD47-204ENST00000471694 NEBP20929 6669 aa2.04□□□□□ -2.08
CD47-204ENST00000471694 KRTAP4-12Q9BQ66 201 aa1.99□□□□□ -2.09
CD47-204ENST00000471694 KRTAP4-2Q9BYR5 136 aa1.99□□□□□ -2.09
CD47-204ENST00000471694 KRTAP5-9P26371 169 aa1.99□□□□□ -2.09
CD47-204ENST00000471694 SYNE1Q8NF91 8797 aaKnown RBP1.95□□□□□ -2.1
CD47-204ENST00000471694 KRTAP9-6A8MVA2 160 aa1.94□□□□□ -2.1
CD47-204ENST00000471694 KRTAP4-4Q9BYR3 166 aa1.92□□□□□ -2.1
CD47-204ENST00000471694 OBSCNQ5VST9 7968 aa1.91□□□□□ -2.1
CD47-204ENST00000471694 KRTAP5-4Q6L8H1 288 aa1.9□□□□□ -2.11
CD47-204ENST00000471694 KRTAP4-11Q9BYQ6 195 aa1.87□□□□□ -2.11
CD47-204ENST00000471694 MACF1Q9UPN3 7388 aaKnown RBP1.83□□□□□ -2.12
CD47-204ENST00000471694 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
CD47-204ENST00000471694 SSPOA2VEC9 5147 aa1.8□□□□□ -2.12
CD47-204ENST00000471694 USH2AO75445 5202 aa1.73□□□□□ -2.13
CD47-204ENST00000471694 KRTAP5-3Q6L8H2 238 aa1.71□□□□□ -2.14
CD47-204ENST00000471694 DSTQ03001 7570 aaKnown RBP1.7□□□□□ -2.14
CD47-204ENST00000471694 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
CD47-204ENST00000471694 PHGR1C9JFL3 82 aa1.65□□□□□ -2.14
CD47-204ENST00000471694 GPR98Q8WXG9 6306 aa1.65□□□□□ -2.15
CD47-204ENST00000471694 KMT2DO14686 5537 aa1.61□□□□□ -2.15
CD47-204ENST00000471694 MDN1Q9NU22 5596 aa1.61□□□□□ -2.15
CD47-204ENST00000471694 FCGBPQ9Y6R7 5405 aaPredicted RBP1.59□□□□□ -2.15
CD47-204ENST00000471694 KRTAP5-8O75690 187 aa1.55□□□□□ -2.16
CD47-204ENST00000471694 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
CD47-204ENST00000471694 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
CD47-204ENST00000471694 MUC5ACP98088 5654 aa1.47□□□□□ -2.17
CD47-204ENST00000471694 MUC12Q9UKN1 5478 aa1.45□□□□□ -2.18
CD47-204ENST00000471694 KRTAP5-2Q701N4 177 aa1.44□□□□□ -2.18
CD47-204ENST00000471694 AHNAKQ09666 5890 aaKnown RBP1.44□□□□□ -2.18
CD47-204ENST00000471694 MUC19Q7Z5P9 8384 aa1.41□□□□□ -2.18
CD47-204ENST00000471694 AHNAK2Q8IVF2 5795 aa1.36□□□□□ -2.19
CD47-204ENST00000471694 KRTAP5-11Q6L8G4 156 aa1.18□□□□□ -2.22
CD47-204ENST00000471694 KRTAP5-10Q6L8G5 202 aa1.18□□□□□ -2.22
CD47-204ENST00000471694 KRTAP5-7Q6L8G8 165 aa1.17□□□□□ -2.22
CD47-204ENST00000471694 KRTAP5-1Q6L8H4 278 aa1.14□□□□□ -2.23
CD47-204ENST00000471694 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
CD47-204ENST00000471694 KRTAP21-2Q3LI59 83 aa1.12□□□□□ -2.23
CD47-204ENST00000471694 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 13.1 ms