RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 SYNE1Q8NF91 8797 aaKnown RBP5.05□□□□□ -1.6
LIMS2-213ENST00000469300 KRTAP4-7Q9BYR0 210 aa5.04□□□□□ -1.6
LIMS2-213ENST00000469300 KRTAP9-2Q9BYQ4 174 aa5.04□□□□□ -1.6
LIMS2-213ENST00000469300 LCE3BQ5TA77 95 aa5.03□□□□□ -1.6
LIMS2-213ENST00000469300 MT1EP04732 61 aa5.03□□□□□ -1.6
LIMS2-213ENST00000469300 MT1LQ93083 61 aa5.03□□□□□ -1.6
LIMS2-213ENST00000469300 OBSCNQ5VST9 7968 aa4.86□□□□□ -1.63
LIMS2-213ENST00000469300 MT1MQ8N339 61 aa4.86□□□□□ -1.63
LIMS2-213ENST00000469300 LCE3DQ9BYE3 92 aa4.83□□□□□ -1.64
LIMS2-213ENST00000469300 KRTAP9-6A0A140TA67 174 aa4.8□□□□□ -1.64
LIMS2-213ENST00000469300 LCE3EQ5T5B0 92 aa4.79□□□□□ -1.64
LIMS2-213ENST00000469300 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.65
LIMS2-213ENST00000469300 KRTAP19-7Q3SYF9 63 aa4.7□□□□□ -1.66
LIMS2-213ENST00000469300 LOC100996750A0A140TA64 210 aa4.69□□□□□ -1.66
LIMS2-213ENST00000469300 MT3P25713 68 aa4.69□□□□□ -1.66
LIMS2-213ENST00000469300 USH2AO75445 5202 aa4.67□□□□□ -1.66
LIMS2-213ENST00000469300 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
LIMS2-213ENST00000469300 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
LIMS2-213ENST00000469300 LCE1AQ5T7P2 110 aa4.61□□□□□ -1.67
LIMS2-213ENST00000469300 KMT2DO14686 5537 aa4.59□□□□□ -1.67
LIMS2-213ENST00000469300 KRTAP6-3Q3LI67 103 aa4.58□□□□□ -1.68
LIMS2-213ENST00000469300 MT4P47944 62 aa4.56□□□□□ -1.68
LIMS2-213ENST00000469300 MT1AP04731 61 aa4.53□□□□□ -1.68
LIMS2-213ENST00000469300 PRM1P04553 51 aa4.52□□□□□ -1.69
LIMS2-213ENST00000469300 SYNE2Q8WXH0 6885 aaKnown RBP4.52□□□□□ -1.69
LIMS2-213ENST00000469300 KRTAP9-7A8MTY7 169 aa4.51□□□□□ -1.69
LIMS2-213ENST00000469300 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
LIMS2-213ENST00000469300 KRTAP20-1Q3LI63 56 aa4.44□□□□□ -1.7
LIMS2-213ENST00000469300 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.41□□□□□ -1.7
LIMS2-213ENST00000469300 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
LIMS2-213ENST00000469300 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
LIMS2-213ENST00000469300 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
LIMS2-213ENST00000469300 LCE5AQ5TCM9 118 aa4.37□□□□□ -1.71
LIMS2-213ENST00000469300 KRTAP2-1Q9BYU5 128 aa4.35□□□□□ -1.71
LIMS2-213ENST00000469300 LCE4AQ5TA78 99 aa4.29□□□□□ -1.72
LIMS2-213ENST00000469300 LCE1DQ5T752 114 aa4.27□□□□□ -1.73
LIMS2-213ENST00000469300 MUC12Q9UKN1 5478 aa4.25□□□□□ -1.73
LIMS2-213ENST00000469300 KRTAP2-2Q9BYT5 123 aa4.25□□□□□ -1.73
LIMS2-213ENST00000469300 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
LIMS2-213ENST00000469300 KRTAP6-1Q3LI64 71 aa4.15□□□□□ -1.74
LIMS2-213ENST00000469300 KRTAP9-4Q9BYQ2 154 aa4.15□□□□□ -1.74
LIMS2-213ENST00000469300 SSPOA2VEC9 5147 aa4.1□□□□□ -1.75
LIMS2-213ENST00000469300 KRTAP6-2Q3LI66 62 aa4.08□□□□□ -1.76
LIMS2-213ENST00000469300 MACF1Q9UPN3 7388 aaKnown RBP4.06□□□□□ -1.76
LIMS2-213ENST00000469300 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
LIMS2-213ENST00000469300 NEBP20929 6669 aa3.79□□□□□ -1.8
LIMS2-213ENST00000469300 MDN1Q9NU22 5596 aa3.73□□□□□ -1.81
LIMS2-213ENST00000469300 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
LIMS2-213ENST00000469300 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.84
LIMS2-213ENST00000469300 KRTAP9-9Q9BYP9 154 aa3.59□□□□□ -1.84
LIMS2-213ENST00000469300 MUC19Q7Z5P9 8384 aa3.58□□□□□ -1.84
LIMS2-213ENST00000469300 LCE1CQ5T751 118 aa3.56□□□□□ -1.84
LIMS2-213ENST00000469300 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
LIMS2-213ENST00000469300 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
LIMS2-213ENST00000469300 KRTAP4-6Q9BYQ5 205 aa3.54□□□□□ -1.84
LIMS2-213ENST00000469300 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
LIMS2-213ENST00000469300 KRTAP5-5Q701N2 237 aaPredicted RBP3.29□□□□□ -1.88
LIMS2-213ENST00000469300 KRTAP4-11Q9BYQ6 195 aa3.28□□□□□ -1.88
LIMS2-213ENST00000469300 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
LIMS2-213ENST00000469300 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
LIMS2-213ENST00000469300 KRTAP4-4Q9BYR3 166 aa3□□□□□ -1.93
LIMS2-213ENST00000469300 HMCN1Q96RW7 5635 aa2.99□□□□□ -1.93
LIMS2-213ENST00000469300 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
LIMS2-213ENST00000469300 KRTAP4-12Q9BQ66 201 aa2.94□□□□□ -1.94
LIMS2-213ENST00000469300 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
LIMS2-213ENST00000469300 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
LIMS2-213ENST00000469300 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
LIMS2-213ENST00000469300 KRTAP5-10Q6L8G5 202 aa2.56□□□□□ -2
LIMS2-213ENST00000469300 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
LIMS2-213ENST00000469300 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
LIMS2-213ENST00000469300 KRTAP5-1Q6L8H4 278 aa2.41□□□□□ -2.02
LIMS2-213ENST00000469300 AHNAKQ09666 5890 aaKnown RBP2.39□□□□□ -2.03
LIMS2-213ENST00000469300 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
LIMS2-213ENST00000469300 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
LIMS2-213ENST00000469300 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.25□□□□□ -2.05
LIMS2-213ENST00000469300 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
LIMS2-213ENST00000469300 KRTAP21-1Q3LI58 79 aa2.06□□□□□ -2.08
LIMS2-213ENST00000469300 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 179.7 ms