RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 SYNE2Q8WXH0 6885 aaKnown RBP6.66□□□□□ -1.34
SMC4-209ENST00000468653 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.64□□□□□ -1.35
SMC4-209ENST00000468653 KRTAP5-9P26371 169 aa6.62□□□□□ -1.35
SMC4-209ENST00000468653 KRTAP19-3Q7Z4W3 81 aa6.61□□□□□ -1.35
SMC4-209ENST00000468653 MUC12Q9UKN1 5478 aa6.59□□□□□ -1.36
SMC4-209ENST00000468653 LUZP6Q538Z0 58 aa6.56□□□□□ -1.36
SMC4-209ENST00000468653 MT1GP13640 62 aa6.55□□□□□ -1.36
SMC4-209ENST00000468653 KRTAP4-7Q9BYR0 210 aa6.55□□□□□ -1.36
SMC4-209ENST00000468653 KRTAP6-3Q3LI67 103 aa6.51□□□□□ -1.37
SMC4-209ENST00000468653 LCE5AQ5TCM9 118 aa6.47□□□□□ -1.37
SMC4-209ENST00000468653 MT1MQ8N339 61 aa6.47□□□□□ -1.37
SMC4-209ENST00000468653 LCE1AQ5T7P2 110 aa6.42□□□□□ -1.38
SMC4-209ENST00000468653 NDUFAF8A1L188 74 aa6.41□□□□□ -1.38
SMC4-209ENST00000468653 SPRR2EP22531 72 aa6.4□□□□□ -1.38
SMC4-209ENST00000468653 SPRR2BP35325 72 aa6.4□□□□□ -1.38
SMC4-209ENST00000468653 SPRR2AP35326 72 aa6.4□□□□□ -1.38
SMC4-209ENST00000468653 KRTAP4-3Q9BYR4 195 aa6.37□□□□□ -1.39
SMC4-209ENST00000468653 KRTAP9-7A8MTY7 169 aa6.35□□□□□ -1.39
SMC4-209ENST00000468653 H3BS24 57 aa6.35□□□□□ -1.39
SMC4-209ENST00000468653 MDN1Q9NU22 5596 aa6.33□□□□□ -1.4
SMC4-209ENST00000468653 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
SMC4-209ENST00000468653 SPRR2DP22532 72 aa6.16□□□□□ -1.42
SMC4-209ENST00000468653 DSTQ03001 7570 aaKnown RBP6.12□□□□□ -1.43
SMC4-209ENST00000468653 NEBP20929 6669 aa6.04□□□□□ -1.44
SMC4-209ENST00000468653 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
SMC4-209ENST00000468653 KRTAP2-3P0C7H8 128 aa5.83□□□□□ -1.48
SMC4-209ENST00000468653 KRTAP2-4Q9BYR9 128 aa5.83□□□□□ -1.48
SMC4-209ENST00000468653 KRTAP2-1Q9BYU5 128 aa5.83□□□□□ -1.48
SMC4-209ENST00000468653 KRTAP5-5Q701N2 237 aaPredicted RBP5.8□□□□□ -1.48
SMC4-209ENST00000468653 MT1AP04731 61 aa5.72□□□□□ -1.49
SMC4-209ENST00000468653 KRTAP5-3Q6L8H2 238 aa5.7□□□□□ -1.5
SMC4-209ENST00000468653 KRTAP6-1Q3LI64 71 aa5.68□□□□□ -1.5
SMC4-209ENST00000468653 A0A0A0MQY5 61 aa5.63□□□□□ -1.51
SMC4-209ENST00000468653 KRTAP20-1Q3LI63 56 aa5.62□□□□□ -1.51
SMC4-209ENST00000468653 KRTAP9-9Q9BYP9 154 aa5.6□□□□□ -1.51
SMC4-209ENST00000468653 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
SMC4-209ENST00000468653 KRTAP2-2Q9BYT5 123 aa5.57□□□□□ -1.52
SMC4-209ENST00000468653 KRTAP5-4Q6L8H1 288 aa5.53□□□□□ -1.52
SMC4-209ENST00000468653 SYNE1Q8NF91 8797 aaKnown RBP5.47□□□□□ -1.53
SMC4-209ENST00000468653 LCE4AQ5TA78 99 aa5.44□□□□□ -1.54
SMC4-209ENST00000468653 KRTAP4-12Q9BQ66 201 aa5.44□□□□□ -1.54
SMC4-209ENST00000468653 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
SMC4-209ENST00000468653 MT4P47944 62 aa5.36□□□□□ -1.55
SMC4-209ENST00000468653 KRTAP4-2Q9BYR5 136 aa5.36□□□□□ -1.55
SMC4-209ENST00000468653 LCE1DQ5T752 114 aa5.32□□□□□ -1.56
SMC4-209ENST00000468653 KRTAP4-9Q9BYQ8 210 aa5.29□□□□□ -1.56
SMC4-209ENST00000468653 INE1O15225 51 aa5.26□□□□□ -1.57
SMC4-209ENST00000468653 KRTAP6-2Q3LI66 62 aa5.24□□□□□ -1.57
SMC4-209ENST00000468653 MT3P25713 68 aa5.2□□□□□ -1.58
SMC4-209ENST00000468653 KRTAP20-2Q3LI61 65 aa5.19□□□□□ -1.58
SMC4-209ENST00000468653 HMCN1Q96RW7 5635 aa5.12□□□□□ -1.59
SMC4-209ENST00000468653 LCE3DQ9BYE3 92 aa5.04□□□□□ -1.6
SMC4-209ENST00000468653 KRTAP5-2Q701N4 177 aa5.01□□□□□ -1.61
SMC4-209ENST00000468653 KRTAP4-11Q9BYQ6 195 aa4.94□□□□□ -1.62
SMC4-209ENST00000468653 LCE3EQ5T5B0 92 aa4.9□□□□□ -1.63
SMC4-209ENST00000468653 OBSCNQ5VST9 7968 aa4.76□□□□□ -1.65
SMC4-209ENST00000468653 AHNAK2Q8IVF2 5795 aa4.53□□□□□ -1.68
SMC4-209ENST00000468653 LCE1EQ5T753 118 aa4.49□□□□□ -1.69
SMC4-209ENST00000468653 KRTAP5-10Q6L8G5 202 aa4.37□□□□□ -1.71
SMC4-209ENST00000468653 KRTAP5-1Q6L8H4 278 aa4.35□□□□□ -1.71
SMC4-209ENST00000468653 KRTAP5-8O75690 187 aa4.31□□□□□ -1.72
SMC4-209ENST00000468653 PRM1P04553 51 aa4.29□□□□□ -1.72
SMC4-209ENST00000468653 LCE1BQ5T7P3 118 aa4.27□□□□□ -1.73
SMC4-209ENST00000468653 GPR98Q8WXG9 6306 aa4.23□□□□□ -1.73
SMC4-209ENST00000468653 LCE1CQ5T751 118 aa4.18□□□□□ -1.74
SMC4-209ENST00000468653 KRTAP5-7Q6L8G8 165 aa4.17□□□□□ -1.74
SMC4-209ENST00000468653 MUC5ACP98088 5654 aa4.15□□□□□ -1.75
SMC4-209ENST00000468653 KRTAP5-6Q6L8G9 129 aaPredicted RBP4□□□□□ -1.77
SMC4-209ENST00000468653 KRTAP21-2Q3LI59 83 aa3.7□□□□□ -1.82
SMC4-209ENST00000468653 KRTAP5-11Q6L8G4 156 aa3.68□□□□□ -1.82
SMC4-209ENST00000468653 MUC5BQ9HC84 5762 aaPredicted RBP3.67□□□□□ -1.82
SMC4-209ENST00000468653 AHNAKQ09666 5890 aaKnown RBP3.43□□□□□ -1.86
SMC4-209ENST00000468653 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
SMC4-209ENST00000468653 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
SMC4-209ENST00000468653 PHGR1C9JFL3 82 aa3.17□□□□□ -1.9
SMC4-209ENST00000468653 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
SMC4-209ENST00000468653 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
SMC4-209ENST00000468653 MUC16Q8WXI7 14507 aa2.04□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms