RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 UQCR11O14957 56 aa1.54□□□□□ -2.16
HMGB1-207ENST00000468384 ACYP2P14621 99 aa1.54□□□□□ -2.16
HMGB1-207ENST00000468384 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
HMGB1-207ENST00000468384 A0A087WVE0 104 aa1.53□□□□□ -2.16
HMGB1-207ENST00000468384 ACYP1P07311 99 aa1.53□□□□□ -2.16
HMGB1-207ENST00000468384 C18orf32Q8TCD1 76 aa1.53□□□□□ -2.16
HMGB1-207ENST00000468384 NCR3O14931 201 aa1.52□□□□□ -2.17
HMGB1-207ENST00000468384 LEPROTL1O95214 131 aa1.52□□□□□ -2.17
HMGB1-207ENST00000468384 MT1LQ93083 61 aa1.52□□□□□ -2.17
HMGB1-207ENST00000468384 KCNQ1DNQ9H478 68 aa1.52□□□□□ -2.17
HMGB1-207ENST00000468384 MYMXA0A1B0GTQ4 84 aa1.51□□□□□ -2.17
HMGB1-207ENST00000468384 D6R8Y8 96 aa1.5□□□□□ -2.17
HMGB1-207ENST00000468384 SPRR1BP22528 89 aa1.5□□□□□ -2.17
HMGB1-207ENST00000468384 MUSTN1Q8IVN3 82 aa1.5□□□□□ -2.17
HMGB1-207ENST00000468384 LINC00472Q9H8W2 130 aa1.5□□□□□ -2.17
HMGB1-207ENST00000468384 COX17Q14061 63 aa1.49□□□□□ -2.17
HMGB1-207ENST00000468384 SMIM4Q8WVI0 70 aa1.49□□□□□ -2.17
HMGB1-207ENST00000468384 LINC00575Q6W349 94 aa1.48□□□□□ -2.17
HMGB1-207ENST00000468384 Q6ZRX8 168 aa1.48□□□□□ -2.17
HMGB1-207ENST00000468384 KRTAP6-2Q3LI66 62 aa1.47□□□□□ -2.17
HMGB1-207ENST00000468384 SMIM13P0DJ93 91 aa1.46□□□□□ -2.18
HMGB1-207ENST00000468384 SMIM11BQ8TCY0 68 aa1.46□□□□□ -2.18
HMGB1-207ENST00000468384 FCER1GP30273 86 aa1.44□□□□□ -2.18
HMGB1-207ENST00000468384 POLR2KP53803 58 aaKnown RBP1.44□□□□□ -2.18
HMGB1-207ENST00000468384 UMAD1C9J7I0 102 aa1.43□□□□□ -2.18
HMGB1-207ENST00000468384 H0Y9P7 68 aa1.43□□□□□ -2.18
HMGB1-207ENST00000468384 GCHFRP30047 84 aa1.43□□□□□ -2.18
HMGB1-207ENST00000468384 KRTAP19-5Q3LI72 72 aa1.43□□□□□ -2.18
HMGB1-207ENST00000468384 Q6JHZ5 121 aa1.43□□□□□ -2.18
HMGB1-207ENST00000468384 GNGT1P63211 74 aa1.42□□□□□ -2.18
HMGB1-207ENST00000468384 RPL39P62891 51 aaKnown RBP1.41□□□□□ -2.18
HMGB1-207ENST00000468384 SPATA8Q6RVD6 105 aa1.41□□□□□ -2.18
HMGB1-207ENST00000468384 C10orf95Q9H7T3 257 aa1.41□□□□□ -2.18
HMGB1-207ENST00000468384 TRBV7-4A0A0J9YYF1 115 aa1.4□□□□□ -2.19
HMGB1-207ENST00000468384 S100ZQ8WXG8 99 aa1.4□□□□□ -2.19
HMGB1-207ENST00000468384 A0A087WXM4 84 aa1.39□□□□□ -2.19
HMGB1-207ENST00000468384 A0A1B0GUT8 65 aa1.38□□□□□ -2.19
HMGB1-207ENST00000468384 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
HMGB1-207ENST00000468384 ATP5EP2Q5VTU8 51 aa1.38□□□□□ -2.19
HMGB1-207ENST00000468384 IFI27P40305 119 aaPredicted RBP1.37□□□□□ -2.19
HMGB1-207ENST00000468384 CDKN2A-AS1Q9UH64 79 aa1.37□□□□□ -2.19
HMGB1-207ENST00000468384 A0A1B0GU69 56 aa1.36□□□□□ -2.19
HMGB1-207ENST00000468384 COX8AP10176 69 aa1.34□□□□□ -2.19
HMGB1-207ENST00000468384 DEFB105AQ8NG35 78 aa1.34□□□□□ -2.19
HMGB1-207ENST00000468384 KRTAP6-1Q3LI64 71 aa1.33□□□□□ -2.2
HMGB1-207ENST00000468384 TMEM167BQ9NRX6 74 aa1.33□□□□□ -2.2
HMGB1-207ENST00000468384 CNFNQ9BYD5 112 aa1.31□□□□□ -2.2
HMGB1-207ENST00000468384 GNG13Q9P2W3 67 aa1.3□□□□□ -2.2
HMGB1-207ENST00000468384 NDUFB1O75438 58 aa1.29□□□□□ -2.2
HMGB1-207ENST00000468384 C3orf79P0CE67 100 aa1.29□□□□□ -2.2
HMGB1-207ENST00000468384 S4R3F8 94 aa1.29□□□□□ -2.2
HMGB1-207ENST00000468384 NREPQ16612 68 aa1.28□□□□□ -2.2
HMGB1-207ENST00000468384 ATXN8Q156A1 80 aa1.27□□□□□ -2.21
HMGB1-207ENST00000468384 MT1AP04731 61 aa1.26□□□□□ -2.21
HMGB1-207ENST00000468384 COX7BP24311 80 aa1.26□□□□□ -2.21
HMGB1-207ENST00000468384 LINC00158P58513 81 aa1.25□□□□□ -2.21
HMGB1-207ENST00000468384 SMIM2Q9BVW6 85 aa1.23□□□□□ -2.21
HMGB1-207ENST00000468384 TP53AIP1Q9HCN2 124 aa1.22□□□□□ -2.21
HMGB1-207ENST00000468384 A0A0D9SG42 100 aa1.21□□□□□ -2.22
HMGB1-207ENST00000468384 IGLV5-48A0A075B6I7 105 aa1.2□□□□□ -2.22
HMGB1-207ENST00000468384 LINC01549A6NIU2 74 aa1.19□□□□□ -2.22
HMGB1-207ENST00000468384 K7EQZ3 153 aa1.18□□□□□ -2.22
HMGB1-207ENST00000468384 K7EMI3 77 aa1.15□□□□□ -2.23
HMGB1-207ENST00000468384 UBL5Q9BZL1 73 aa1.14□□□□□ -2.23
HMGB1-207ENST00000468384 IGIPA6NJ69 53 aa1.13□□□□□ -2.23
HMGB1-207ENST00000468384 MRPL34Q9BQ48 92 aaKnown RBP1.12□□□□□ -2.23
HMGB1-207ENST00000468384 M0QZ58 72 aa1.09□□□□□ -2.23
HMGB1-207ENST00000468384 SERF2P84101 59 aa1.08□□□□□ -2.24
HMGB1-207ENST00000468384 TOMM5Q8N4H5 51 aa1.05□□□□□ -2.24
HMGB1-207ENST00000468384 LINC01546A6NGU7 62 aa0.91□□□□□ -2.26
HMGB1-207ENST00000468384 PLNP26678 52 aa0.9□□□□□ -2.27
HMGB1-207ENST00000468384 H0YGX0 51 aa0.86□□□□□ -2.27
HMGB1-207ENST00000468384 SMIM27A0A1W2PRY6 76 aa0.83□□□□□ -2.28
HMGB1-207ENST00000468384 LINC00308Q8TCZ7 52 aa0.83□□□□□ -2.28
HMGB1-207ENST00000468384 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
HMGB1-207ENST00000468384 MMP24-AS1A0A0U1RRL7 71 aa0.7□□□□□ -2.3
HMGB1-207ENST00000468384 PRM1P04553 51 aa0.67□□□□□ -2.3
HMGB1-207ENST00000468384 TNP1P09430 55 aa0.56□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 464 ms