RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 SSPOA2VEC9 5147 aa2.51□□□□□ -2.01
USP39-213ENST00000467885 KRTAP10-5P60370 271 aa2.49□□□□□ -2.01
USP39-213ENST00000467885 MT1XP80297 61 aa2.49□□□□□ -2.01
USP39-213ENST00000467885 SPINT4Q6UDR6 99 aa2.48□□□□□ -2.01
USP39-213ENST00000467885 MT3P25713 68 aa2.46□□□□□ -2.02
USP39-213ENST00000467885 KTN1-AS1Q86SY8 53 aa2.45□□□□□ -2.02
USP39-213ENST00000467885 CDC42SE1Q9NRR8 79 aa2.45□□□□□ -2.02
USP39-213ENST00000467885 FCGBPQ9Y6R7 5405 aaPredicted RBP2.43□□□□□ -2.02
USP39-213ENST00000467885 KRTAP9-6A8MVA2 160 aa2.42□□□□□ -2.02
USP39-213ENST00000467885 C10orf95Q9H7T3 257 aa2.42□□□□□ -2.02
USP39-213ENST00000467885 PRO2289Q9P1D8 64 aa2.41□□□□□ -2.02
USP39-213ENST00000467885 BRK1Q8WUW1 75 aa2.4□□□□□ -2.03
USP39-213ENST00000467885 KRTAP10-12P60413 245 aa2.37□□□□□ -2.03
USP39-213ENST00000467885 TNP1P09430 55 aa2.31□□□□□ -2.04
USP39-213ENST00000467885 ROMO1P60602 79 aa2.31□□□□□ -2.04
USP39-213ENST00000467885 OBSCNQ5VST9 7968 aa2.3□□□□□ -2.04
USP39-213ENST00000467885 KRTAP25-1Q3LHN0 102 aa2.3□□□□□ -2.04
USP39-213ENST00000467885 MACF1Q9UPN3 7388 aaKnown RBP2.29□□□□□ -2.04
USP39-213ENST00000467885 KRTAP6-3Q3LI67 103 aa2.26□□□□□ -2.05
USP39-213ENST00000467885 SYNE2Q8WXH0 6885 aaKnown RBP2.25□□□□□ -2.05
USP39-213ENST00000467885 LCE3AQ5TA76 89 aa2.25□□□□□ -2.05
USP39-213ENST00000467885 KRTAP8-1Q8IUC2 63 aa2.25□□□□□ -2.05
USP39-213ENST00000467885 KMT2DO14686 5537 aa2.24□□□□□ -2.05
USP39-213ENST00000467885 KRTAP4-3Q9BYR4 195 aa2.24□□□□□ -2.05
USP39-213ENST00000467885 KRTAP19-7Q3SYF9 63 aa2.23□□□□□ -2.05
USP39-213ENST00000467885 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
USP39-213ENST00000467885 KRTAP19-5Q3LI72 72 aa2.22□□□□□ -2.05
USP39-213ENST00000467885 SPRR2FQ96RM1 72 aa2.19□□□□□ -2.06
USP39-213ENST00000467885 MT1EP04732 61 aa2.17□□□□□ -2.06
USP39-213ENST00000467885 KRTAP12-3P60328 96 aa2.17□□□□□ -2.06
USP39-213ENST00000467885 PP632Q6XCG6 107 aa2.17□□□□□ -2.06
USP39-213ENST00000467885 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
USP39-213ENST00000467885 MUC12Q9UKN1 5478 aa2.12□□□□□ -2.07
USP39-213ENST00000467885 LCE3CQ5T5A8 94 aa2.12□□□□□ -2.07
USP39-213ENST00000467885 MT1LQ93083 61 aa2.12□□□□□ -2.07
USP39-213ENST00000467885 MT1GP13640 62 aa2.11□□□□□ -2.07
USP39-213ENST00000467885 KRTAP19-3Q7Z4W3 81 aa2.11□□□□□ -2.07
USP39-213ENST00000467885 SPRR2EP22531 72 aa2.1□□□□□ -2.07
USP39-213ENST00000467885 SPRR2BP35325 72 aa2.1□□□□□ -2.07
USP39-213ENST00000467885 SPRR2AP35326 72 aa2.1□□□□□ -2.07
USP39-213ENST00000467885 NEBP20929 6669 aa2.08□□□□□ -2.08
USP39-213ENST00000467885 MDN1Q9NU22 5596 aa2.08□□□□□ -2.08
USP39-213ENST00000467885 MT1MQ8N339 61 aa2.06□□□□□ -2.08
USP39-213ENST00000467885 KRTAP20-1Q3LI63 56 aa2.04□□□□□ -2.08
USP39-213ENST00000467885 SPRR2DP22532 72 aa2.02□□□□□ -2.09
USP39-213ENST00000467885 KRTAP2-3P0C7H8 128 aa2□□□□□ -2.09
USP39-213ENST00000467885 KRTAP2-4Q9BYR9 128 aa2□□□□□ -2.09
USP39-213ENST00000467885 KRTAP2-1Q9BYU5 128 aa1.95□□□□□ -2.1
USP39-213ENST00000467885 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
USP39-213ENST00000467885 LCE3EQ5T5B0 92 aa1.93□□□□□ -2.1
USP39-213ENST00000467885 SPRR5A0A1B0GTR4 108 aa1.92□□□□□ -2.1
USP39-213ENST00000467885 KRTAP5-5Q701N2 237 aaPredicted RBP1.9□□□□□ -2.11
USP39-213ENST00000467885 INE1O15225 51 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 KRTAP5-8O75690 187 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 MT1AP04731 61 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 KRTAP6-1Q3LI64 71 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 LCE1CQ5T751 118 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 LCE1BQ5T7P3 118 aa1.8□□□□□ -2.12
USP39-213ENST00000467885 MT4P47944 62 aa1.77□□□□□ -2.13
USP39-213ENST00000467885 SYNE1Q8NF91 8797 aaKnown RBP1.76□□□□□ -2.13
USP39-213ENST00000467885 KRTAP12-4P60329 112 aa1.75□□□□□ -2.13
USP39-213ENST00000467885 KRTAP20-2Q3LI61 65 aa1.72□□□□□ -2.13
USP39-213ENST00000467885 HMCN1Q96RW7 5635 aa1.7□□□□□ -2.14
USP39-213ENST00000467885 KRTAP6-2Q3LI66 62 aa1.67□□□□□ -2.14
USP39-213ENST00000467885 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
USP39-213ENST00000467885 KRTAP5-10Q6L8G5 202 aa1.63□□□□□ -2.15
USP39-213ENST00000467885 LCE3DQ9BYE3 92 aa1.63□□□□□ -2.15
USP39-213ENST00000467885 KRTAP5-7Q6L8G8 165 aa1.59□□□□□ -2.15
USP39-213ENST00000467885 AHNAK2Q8IVF2 5795 aa1.53□□□□□ -2.16
USP39-213ENST00000467885 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
USP39-213ENST00000467885 MUC5ACP98088 5654 aa1.33□□□□□ -2.2
USP39-213ENST00000467885 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
USP39-213ENST00000467885 AHNAKQ09666 5890 aaKnown RBP1.28□□□□□ -2.2
USP39-213ENST00000467885 MUC5BQ9HC84 5762 aaPredicted RBP1.23□□□□□ -2.21
USP39-213ENST00000467885 PRM1P04553 51 aa1.19□□□□□ -2.22
USP39-213ENST00000467885 PHGR1C9JFL3 82 aa1.05□□□□□ -2.24
USP39-213ENST00000467885 KRTAP21-1Q3LI58 79 aa0.74□□□□□ -2.29
USP39-213ENST00000467885 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 85.2 ms