RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 LCE3BQ5TA77 95 aa6.42□□□□□ -1.38
VPS52-214ENST00000463486 A6NED7 52 aa6.36□□□□□ -1.39
VPS52-214ENST00000463486 DSTQ03001 7570 aaKnown RBP6.35□□□□□ -1.39
VPS52-214ENST00000463486 MT1GP13640 62 aa6.33□□□□□ -1.4
VPS52-214ENST00000463486 MT1LQ93083 61 aa6.33□□□□□ -1.4
VPS52-214ENST00000463486 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
VPS52-214ENST00000463486 MT1MQ8N339 61 aa6.25□□□□□ -1.41
VPS52-214ENST00000463486 KRTAP12-3P60328 96 aa6.21□□□□□ -1.42
VPS52-214ENST00000463486 PP632Q6XCG6 107 aa6.2□□□□□ -1.42
VPS52-214ENST00000463486 KRTAP4-3Q9BYR4 195 aa6.12□□□□□ -1.43
VPS52-214ENST00000463486 CDC42SE1Q9NRR8 79 aa6.1□□□□□ -1.43
VPS52-214ENST00000463486 KRTAP23-1A1A580 65 aa6.07□□□□□ -1.44
VPS52-214ENST00000463486 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
VPS52-214ENST00000463486 ROMO1P60602 79 aa6□□□□□ -1.45
VPS52-214ENST00000463486 KRTAP4-9Q9BYQ8 210 aa5.94□□□□□ -1.46
VPS52-214ENST00000463486 HMCN1Q96RW7 5635 aa5.88□□□□□ -1.47
VPS52-214ENST00000463486 KRTAP5-4Q6L8H1 288 aa5.88□□□□□ -1.47
VPS52-214ENST00000463486 KRTAP15-1Q3LI76 137 aa5.87□□□□□ -1.47
VPS52-214ENST00000463486 KRTAP19-4Q3LI73 84 aa5.86□□□□□ -1.47
VPS52-214ENST00000463486 LCE4AQ5TA78 99 aa5.86□□□□□ -1.47
VPS52-214ENST00000463486 LCE1DQ5T752 114 aa5.83□□□□□ -1.48
VPS52-214ENST00000463486 MT4P47944 62 aa5.76□□□□□ -1.49
VPS52-214ENST00000463486 LCE3CQ5T5A8 94 aa5.76□□□□□ -1.49
VPS52-214ENST00000463486 KRTAP5-5Q701N2 237 aaPredicted RBP5.76□□□□□ -1.49
VPS52-214ENST00000463486 GPR98Q8WXG9 6306 aa5.75□□□□□ -1.49
VPS52-214ENST00000463486 LOC100996750A0A140TA64 210 aa5.72□□□□□ -1.49
VPS52-214ENST00000463486 SVIPQ8NHG7 77 aa5.7□□□□□ -1.5
VPS52-214ENST00000463486 BRK1Q8WUW1 75 aa5.7□□□□□ -1.5
VPS52-214ENST00000463486 KRTAP4-6Q9BYQ5 205 aa5.69□□□□□ -1.5
VPS52-214ENST00000463486 AHNAK2Q8IVF2 5795 aa5.61□□□□□ -1.51
VPS52-214ENST00000463486 SYNE1Q8NF91 8797 aaKnown RBP5.55□□□□□ -1.52
VPS52-214ENST00000463486 KRTAP9-6A8MVA2 160 aa5.5□□□□□ -1.53
VPS52-214ENST00000463486 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
VPS52-214ENST00000463486 KRTAP20-2Q3LI61 65 aa5.49□□□□□ -1.53
VPS52-214ENST00000463486 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
VPS52-214ENST00000463486 PMAIP1Q13794 54 aa5.38□□□□□ -1.55
VPS52-214ENST00000463486 MT1AP04731 61 aa5.37□□□□□ -1.55
VPS52-214ENST00000463486 KRTAP5-3Q6L8H2 238 aa5.37□□□□□ -1.55
VPS52-214ENST00000463486 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
VPS52-214ENST00000463486 KRTAP5-10Q6L8G5 202 aa5.34□□□□□ -1.55
VPS52-214ENST00000463486 KRTAP5-2Q701N4 177 aa5.18□□□□□ -1.58
VPS52-214ENST00000463486 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
VPS52-214ENST00000463486 PRO0628Q9UI54 55 aa5.14□□□□□ -1.59
VPS52-214ENST00000463486 PRAC1Q96KF2 57 aa5.1□□□□□ -1.59
VPS52-214ENST00000463486 KRTAP5-7Q6L8G8 165 aa5.08□□□□□ -1.6
VPS52-214ENST00000463486 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
VPS52-214ENST00000463486 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
VPS52-214ENST00000463486 MT3P25713 68 aa4.88□□□□□ -1.63
VPS52-214ENST00000463486 KTN1-AS1Q86SY8 53 aa4.86□□□□□ -1.63
VPS52-214ENST00000463486 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
VPS52-214ENST00000463486 KRTAP5-8O75690 187 aa4.81□□□□□ -1.64
VPS52-214ENST00000463486 MUC5ACP98088 5654 aa4.69□□□□□ -1.66
VPS52-214ENST00000463486 AHNAKQ09666 5890 aaKnown RBP4.63□□□□□ -1.67
VPS52-214ENST00000463486 MUC5BQ9HC84 5762 aaPredicted RBP4.61□□□□□ -1.67
VPS52-214ENST00000463486 KRTAP5-1Q6L8H4 278 aa4.61□□□□□ -1.67
VPS52-214ENST00000463486 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
VPS52-214ENST00000463486 KRTAP9-9Q9BYP9 154 aa4.44□□□□□ -1.7
VPS52-214ENST00000463486 LUZP6Q538Z0 58 aa4.35□□□□□ -1.71
VPS52-214ENST00000463486 KRTAP4-12Q9BQ66 201 aa4.29□□□□□ -1.72
VPS52-214ENST00000463486 KRTAP4-2Q9BYR5 136 aa4.23□□□□□ -1.73
VPS52-214ENST00000463486 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
VPS52-214ENST00000463486 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
VPS52-214ENST00000463486 LCE1BQ5T7P3 118 aa4.15□□□□□ -1.75
VPS52-214ENST00000463486 H3BS24 57 aa3.99□□□□□ -1.77
VPS52-214ENST00000463486 LCE3EQ5T5B0 92 aa3.95□□□□□ -1.78
VPS52-214ENST00000463486 A0A0A0MQY5 61 aa3.91□□□□□ -1.78
VPS52-214ENST00000463486 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
VPS52-214ENST00000463486 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
VPS52-214ENST00000463486 NDUFAF8A1L188 74 aa3.64□□□□□ -1.83
VPS52-214ENST00000463486 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
VPS52-214ENST00000463486 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
VPS52-214ENST00000463486 PHGR1C9JFL3 82 aa3.23□□□□□ -1.89
VPS52-214ENST00000463486 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
VPS52-214ENST00000463486 PRM1P04553 51 aa3.08□□□□□ -1.92
VPS52-214ENST00000463486 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
VPS52-214ENST00000463486 INE1O15225 51 aa2.97□□□□□ -1.93
VPS52-214ENST00000463486 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
VPS52-214ENST00000463486 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 71.5 ms