RNA–Protein interactions for RNA: ENST00000463407.5

NUP58-206, Transcript of nucleoporin 58, humanhuman

TSL 1 (best) BASIC

Gene NUP58, Length 6,360 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP58-206ENST00000463407 LCE3EQ5T5B0 92 aa4.07□□□□□ -1.76
NUP58-206ENST00000463407 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
NUP58-206ENST00000463407 ABCA13Q86UQ4 5058 aa3.99□□□□□ -1.77
NUP58-206ENST00000463407 LOC100996750A0A140TA64 210 aa3.99□□□□□ -1.77
NUP58-206ENST00000463407 MT3P25713 68 aa3.98□□□□□ -1.77
NUP58-206ENST00000463407 KRTAP4-3Q9BYR4 195 aa3.98□□□□□ -1.77
NUP58-206ENST00000463407 KRTAP20-1Q3LI63 56 aa3.93□□□□□ -1.78
NUP58-206ENST00000463407 KRTAP9-7A8MTY7 169 aa3.89□□□□□ -1.79
NUP58-206ENST00000463407 FAT4Q6V0I7 4981 aa3.89□□□□□ -1.79
NUP58-206ENST00000463407 LCE1BQ5T7P3 118 aa3.86□□□□□ -1.79
NUP58-206ENST00000463407 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
NUP58-206ENST00000463407 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
NUP58-206ENST00000463407 RNF213Q63HN8 5207 aa3.82□□□□□ -1.8
NUP58-206ENST00000463407 HMCN2Q8NDA2 5059 aa3.8□□□□□ -1.8
NUP58-206ENST00000463407 KRTAP6-3Q3LI67 103 aa3.8□□□□□ -1.8
NUP58-206ENST00000463407 MT1AP04731 61 aa3.75□□□□□ -1.81
NUP58-206ENST00000463407 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.75□□□□□ -1.81
NUP58-206ENST00000463407 FSIP2Q5CZC0 6907 aa3.74□□□□□ -1.81
NUP58-206ENST00000463407 KRTAP2-3P0C7H8 128 aa3.74□□□□□ -1.81
NUP58-206ENST00000463407 KRTAP2-4Q9BYR9 128 aa3.74□□□□□ -1.81
NUP58-206ENST00000463407 PRM1P04553 51 aa3.73□□□□□ -1.81
NUP58-206ENST00000463407 UBR4Q5T4S7 5183 aa3.7□□□□□ -1.82
NUP58-206ENST00000463407 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
NUP58-206ENST00000463407 LCE5AQ5TCM9 118 aa3.66□□□□□ -1.82
NUP58-206ENST00000463407 SYNE2Q8WXH0 6885 aaKnown RBP3.64□□□□□ -1.83
NUP58-206ENST00000463407 KRTAP4-9Q9BYQ8 210 aa3.64□□□□□ -1.83
NUP58-206ENST00000463407 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
NUP58-206ENST00000463407 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
NUP58-206ENST00000463407 LCE4AQ5TA78 99 aa3.59□□□□□ -1.84
NUP58-206ENST00000463407 MUC2Q02817 5179 aa3.56□□□□□ -1.84
NUP58-206ENST00000463407 KRTAP6-1Q3LI64 71 aa3.54□□□□□ -1.84
NUP58-206ENST00000463407 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
NUP58-206ENST00000463407 KRTAP9-4Q9BYQ2 154 aa3.52□□□□□ -1.85
NUP58-206ENST00000463407 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
NUP58-206ENST00000463407 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
NUP58-206ENST00000463407 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
NUP58-206ENST00000463407 LCE1FQ5T754 118 aa3.33□□□□□ -1.88
NUP58-206ENST00000463407 SYNE1Q8NF91 8797 aaKnown RBP3.3□□□□□ -1.88
NUP58-206ENST00000463407 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
NUP58-206ENST00000463407 KRTAP9-9Q9BYP9 154 aa3.18□□□□□ -1.9
NUP58-206ENST00000463407 KRTAP5-9P26371 169 aa3.16□□□□□ -1.9
NUP58-206ENST00000463407 USH2AO75445 5202 aa3.14□□□□□ -1.91
NUP58-206ENST00000463407 NEBP20929 6669 aa3.09□□□□□ -1.91
NUP58-206ENST00000463407 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.92
NUP58-206ENST00000463407 KRTAP4-6Q9BYQ5 205 aa3.06□□□□□ -1.92
NUP58-206ENST00000463407 KMT2DO14686 5537 aa3.06□□□□□ -1.92
NUP58-206ENST00000463407 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
NUP58-206ENST00000463407 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
NUP58-206ENST00000463407 FCGBPQ9Y6R7 5405 aaPredicted RBP2.95□□□□□ -1.94
NUP58-206ENST00000463407 DSTQ03001 7570 aaKnown RBP2.88□□□□□ -1.95
NUP58-206ENST00000463407 KRTAP5-4Q6L8H1 288 aa2.82□□□□□ -1.96
NUP58-206ENST00000463407 KRTAP4-11Q9BYQ6 195 aa2.76□□□□□ -1.97
NUP58-206ENST00000463407 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
NUP58-206ENST00000463407 KRTAP4-2Q9BYR5 136 aa2.73□□□□□ -1.97
NUP58-206ENST00000463407 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
NUP58-206ENST00000463407 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
NUP58-206ENST00000463407 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
NUP58-206ENST00000463407 MDN1Q9NU22 5596 aa2.6□□□□□ -1.99
NUP58-206ENST00000463407 KRTAP5-3Q6L8H2 238 aa2.48□□□□□ -2.01
NUP58-206ENST00000463407 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
NUP58-206ENST00000463407 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
NUP58-206ENST00000463407 KRTAP5-8O75690 187 aa2.28□□□□□ -2.04
NUP58-206ENST00000463407 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
NUP58-206ENST00000463407 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
NUP58-206ENST00000463407 HMCN1Q96RW7 5635 aa2.13□□□□□ -2.07
NUP58-206ENST00000463407 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
NUP58-206ENST00000463407 AHNAK2Q8IVF2 5795 aa2.08□□□□□ -2.08
NUP58-206ENST00000463407 KRTAP5-10Q6L8G5 202 aa2.06□□□□□ -2.08
NUP58-206ENST00000463407 MUC5BQ9HC84 5762 aaPredicted RBP1.94□□□□□ -2.1
NUP58-206ENST00000463407 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
NUP58-206ENST00000463407 KRTAP5-1Q6L8H4 278 aa1.89□□□□□ -2.11
NUP58-206ENST00000463407 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
NUP58-206ENST00000463407 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
NUP58-206ENST00000463407 KRTAP5-7Q6L8G8 165 aa1.7□□□□□ -2.14
NUP58-206ENST00000463407 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
NUP58-206ENST00000463407 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
NUP58-206ENST00000463407 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 158.5 ms