RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 KRTAP10-5P60370 271 aa3.3□□□□□ -1.88
USP4-207ENST00000462673 TNP1P09430 55 aa3.27□□□□□ -1.89
USP4-207ENST00000462673 SPRR5A0A1B0GTR4 108 aa3.24□□□□□ -1.89
USP4-207ENST00000462673 FCGBPQ9Y6R7 5405 aaPredicted RBP3.24□□□□□ -1.89
USP4-207ENST00000462673 MT1XP80297 61 aa3.19□□□□□ -1.9
USP4-207ENST00000462673 MACF1Q9UPN3 7388 aaKnown RBP3.18□□□□□ -1.9
USP4-207ENST00000462673 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
USP4-207ENST00000462673 KRTAP6-3Q3LI67 103 aa3.15□□□□□ -1.91
USP4-207ENST00000462673 KRTAP10-12P60413 245 aa3.08□□□□□ -1.92
USP4-207ENST00000462673 KRTAP8-1Q8IUC2 63 aa3.08□□□□□ -1.92
USP4-207ENST00000462673 INE1O15225 51 aa3.06□□□□□ -1.92
USP4-207ENST00000462673 NEBP20929 6669 aa3.04□□□□□ -1.92
USP4-207ENST00000462673 KRTAP5-9P26371 169 aa3.04□□□□□ -1.92
USP4-207ENST00000462673 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
USP4-207ENST00000462673 LCE3AQ5TA76 89 aa3.02□□□□□ -1.93
USP4-207ENST00000462673 SPRR2FQ96RM1 72 aa3.01□□□□□ -1.93
USP4-207ENST00000462673 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
USP4-207ENST00000462673 MUC12Q9UKN1 5478 aa2.95□□□□□ -1.94
USP4-207ENST00000462673 KMT2DO14686 5537 aa2.94□□□□□ -1.94
USP4-207ENST00000462673 SPRR2EP22531 72 aa2.93□□□□□ -1.94
USP4-207ENST00000462673 SPRR2BP35325 72 aa2.93□□□□□ -1.94
USP4-207ENST00000462673 SPRR2AP35326 72 aa2.93□□□□□ -1.94
USP4-207ENST00000462673 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
USP4-207ENST00000462673 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
USP4-207ENST00000462673 KRTAP12-3P60328 96 aa2.88□□□□□ -1.95
USP4-207ENST00000462673 KRTAP19-7Q3SYF9 63 aa2.85□□□□□ -1.95
USP4-207ENST00000462673 KRTAP2-3P0C7H8 128 aa2.84□□□□□ -1.95
USP4-207ENST00000462673 SPRR2DP22532 72 aa2.84□□□□□ -1.95
USP4-207ENST00000462673 KRTAP19-5Q3LI72 72 aa2.84□□□□□ -1.95
USP4-207ENST00000462673 KRTAP2-4Q9BYR9 128 aa2.84□□□□□ -1.95
USP4-207ENST00000462673 MT1EP04732 61 aa2.83□□□□□ -1.96
USP4-207ENST00000462673 MT1GP13640 62 aa2.81□□□□□ -1.96
USP4-207ENST00000462673 KRTAP19-3Q7Z4W3 81 aa2.81□□□□□ -1.96
USP4-207ENST00000462673 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
USP4-207ENST00000462673 KRTAP2-1Q9BYU5 128 aa2.76□□□□□ -1.97
USP4-207ENST00000462673 MT1LQ93083 61 aa2.73□□□□□ -1.97
USP4-207ENST00000462673 LCE3CQ5T5A8 94 aa2.71□□□□□ -1.98
USP4-207ENST00000462673 GPR98Q8WXG9 6306 aa2.7□□□□□ -1.98
USP4-207ENST00000462673 MT1MQ8N339 61 aa2.68□□□□□ -1.98
USP4-207ENST00000462673 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
USP4-207ENST00000462673 KRTAP9-6A8MVA2 160 aa2.55□□□□□ -2
USP4-207ENST00000462673 KRTAP4-3Q9BYR4 195 aa2.55□□□□□ -2
USP4-207ENST00000462673 MT3P25713 68 aa2.52□□□□□ -2.01
USP4-207ENST00000462673 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
USP4-207ENST00000462673 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
USP4-207ENST00000462673 KRTAP5-4Q6L8H1 288 aa2.47□□□□□ -2.01
USP4-207ENST00000462673 KRTAP12-4P60329 112 aa2.46□□□□□ -2.02
USP4-207ENST00000462673 MT4P47944 62 aa2.44□□□□□ -2.02
USP4-207ENST00000462673 KRTAP5-5Q701N2 237 aaPredicted RBP2.43□□□□□ -2.02
USP4-207ENST00000462673 MT1AP04731 61 aa2.35□□□□□ -2.03
USP4-207ENST00000462673 HMCN1Q96RW7 5635 aa2.35□□□□□ -2.03
USP4-207ENST00000462673 AHNAK2Q8IVF2 5795 aa2.35□□□□□ -2.03
USP4-207ENST00000462673 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
USP4-207ENST00000462673 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
USP4-207ENST00000462673 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
USP4-207ENST00000462673 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
USP4-207ENST00000462673 KRTAP6-1Q3LI64 71 aa2.28□□□□□ -2.04
USP4-207ENST00000462673 SYNE1Q8NF91 8797 aaKnown RBP2.25□□□□□ -2.05
USP4-207ENST00000462673 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
USP4-207ENST00000462673 KRTAP6-2Q3LI66 62 aa2.18□□□□□ -2.06
USP4-207ENST00000462673 KRTAP5-1Q6L8H4 278 aa2.17□□□□□ -2.06
USP4-207ENST00000462673 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
USP4-207ENST00000462673 LCE3EQ5T5B0 92 aa2.12□□□□□ -2.07
USP4-207ENST00000462673 LCE3DQ9BYE3 92 aa2.11□□□□□ -2.07
USP4-207ENST00000462673 KRTAP4-4Q9BYR3 166 aa2.11□□□□□ -2.07
USP4-207ENST00000462673 PRM1P04553 51 aa2.09□□□□□ -2.07
USP4-207ENST00000462673 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
USP4-207ENST00000462673 OBSCNQ5VST9 7968 aa2.03□□□□□ -2.09
USP4-207ENST00000462673 MUC5ACP98088 5654 aa2.02□□□□□ -2.09
USP4-207ENST00000462673 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
USP4-207ENST00000462673 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
USP4-207ENST00000462673 LCE1CQ5T751 118 aa1.82□□□□□ -2.12
USP4-207ENST00000462673 LCE1BQ5T7P3 118 aa1.82□□□□□ -2.12
USP4-207ENST00000462673 KRTAP21-2Q3LI59 83 aa1.5□□□□□ -2.17
USP4-207ENST00000462673 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
USP4-207ENST00000462673 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
USP4-207ENST00000462673 MUC19Q7Z5P9 8384 aa1.27□□□□□ -2.21
USP4-207ENST00000462673 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 78.4 ms