RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 CDC42SE1Q9NRR8 79 aa10.14□□□□□ -0.79
SMARCC1-203ENST00000454240 LCE3BQ5TA77 95 aa10.02□□□□□ -0.81
SMARCC1-203ENST00000454240 KRTAP2-2Q9BYT5 123 aa10.02□□□□□ -0.81
SMARCC1-203ENST00000454240 KRTAP2-1Q9BYU5 128 aa10.02□□□□□ -0.81
SMARCC1-203ENST00000454240 MT1GP13640 62 aa10.01□□□□□ -0.81
SMARCC1-203ENST00000454240 MT1LQ93083 61 aa10□□□□□ -0.81
SMARCC1-203ENST00000454240 KRTAP12-3P60328 96 aa9.95□□□□□ -0.82
SMARCC1-203ENST00000454240 PP632Q6XCG6 107 aa9.89□□□□□ -0.83
SMARCC1-203ENST00000454240 ROMO1P60602 79 aa9.88□□□□□ -0.83
SMARCC1-203ENST00000454240 KRTAP23-1A1A580 65 aa9.87□□□□□ -0.83
SMARCC1-203ENST00000454240 MT1MQ8N339 61 aa9.84□□□□□ -0.83
SMARCC1-203ENST00000454240 DSTQ03001 7570 aaKnown RBP9.81□□□□□ -0.84
SMARCC1-203ENST00000454240 KRTAP4-3Q9BYR4 195 aa9.59□□□□□ -0.87
SMARCC1-203ENST00000454240 KRTAP4-7Q9BYR0 210 aa9.53□□□□□ -0.88
SMARCC1-203ENST00000454240 BRK1Q8WUW1 75 aa9.52□□□□□ -0.89
SMARCC1-203ENST00000454240 KRTAP15-1Q3LI76 137 aa9.47□□□□□ -0.89
SMARCC1-203ENST00000454240 KRTAP19-4Q3LI73 84 aa9.45□□□□□ -0.9
SMARCC1-203ENST00000454240 LCE3CQ5T5A8 94 aa9.22□□□□□ -0.93
SMARCC1-203ENST00000454240 LCE4AQ5TA78 99 aa9.19□□□□□ -0.94
SMARCC1-203ENST00000454240 KRTAP4-9Q9BYQ8 210 aa9.19□□□□□ -0.94
SMARCC1-203ENST00000454240 KRTAP5-4Q6L8H1 288 aa9.13□□□□□ -0.95
SMARCC1-203ENST00000454240 LCE1DQ5T752 114 aa9.05□□□□□ -0.96
SMARCC1-203ENST00000454240 LOC100996750A0A140TA64 210 aa9□□□□□ -0.97
SMARCC1-203ENST00000454240 KRTAP5-5Q701N2 237 aaPredicted RBP9□□□□□ -0.97
SMARCC1-203ENST00000454240 MT4P47944 62 aa8.99□□□□□ -0.97
SMARCC1-203ENST00000454240 PMAIP1Q13794 54 aa8.98□□□□□ -0.97
SMARCC1-203ENST00000454240 HMCN1Q96RW7 5635 aa8.85□□□□□ -0.99
SMARCC1-203ENST00000454240 KRTAP4-6Q9BYQ5 205 aa8.82□□□□□ -1
SMARCC1-203ENST00000454240 KRTAP9-6A8MVA2 160 aa8.71□□□□□ -1.02
SMARCC1-203ENST00000454240 PRO0628Q9UI54 55 aa8.71□□□□□ -1.02
SMARCC1-203ENST00000454240 KRTAP12-4P60329 112 aa8.61□□□□□ -1.03
SMARCC1-203ENST00000454240 SPRR5A0A1B0GTR4 108 aa8.58□□□□□ -1.04
SMARCC1-203ENST00000454240 SYNE1Q8NF91 8797 aaKnown RBP8.57□□□□□ -1.04
SMARCC1-203ENST00000454240 KRTAP20-2Q3LI61 65 aa8.56□□□□□ -1.04
SMARCC1-203ENST00000454240 PRAC1Q96KF2 57 aa8.54□□□□□ -1.04
SMARCC1-203ENST00000454240 MT1AP04731 61 aa8.51□□□□□ -1.05
SMARCC1-203ENST00000454240 GPR98Q8WXG9 6306 aa8.47□□□□□ -1.05
SMARCC1-203ENST00000454240 KRTAP6-1Q3LI64 71 aa8.43□□□□□ -1.06
SMARCC1-203ENST00000454240 AHNAK2Q8IVF2 5795 aa8.38□□□□□ -1.07
SMARCC1-203ENST00000454240 KRTAP5-3Q6L8H2 238 aa8.32□□□□□ -1.08
SMARCC1-203ENST00000454240 KTN1-AS1Q86SY8 53 aa8.22□□□□□ -1.09
SMARCC1-203ENST00000454240 KRTAP9-4Q9BYQ2 154 aa8.19□□□□□ -1.1
SMARCC1-203ENST00000454240 KRTAP5-10Q6L8G5 202 aa8.17□□□□□ -1.1
SMARCC1-203ENST00000454240 KRTAP5-2Q701N4 177 aa8.09□□□□□ -1.11
SMARCC1-203ENST00000454240 KRTAP6-2Q3LI66 62 aa7.96□□□□□ -1.14
SMARCC1-203ENST00000454240 KRTAP5-7Q6L8G8 165 aa7.78□□□□□ -1.16
SMARCC1-203ENST00000454240 SVIPQ8NHG7 77 aa7.77□□□□□ -1.17
SMARCC1-203ENST00000454240 MT3P25713 68 aa7.76□□□□□ -1.17
SMARCC1-203ENST00000454240 KRTAP4-11Q9BYQ6 195 aa7.7□□□□□ -1.18
SMARCC1-203ENST00000454240 OBSCNQ5VST9 7968 aa7.48□□□□□ -1.21
SMARCC1-203ENST00000454240 KRTAP5-8O75690 187 aa7.44□□□□□ -1.22
SMARCC1-203ENST00000454240 KRTAP5-1Q6L8H4 278 aa7.16□□□□□ -1.26
SMARCC1-203ENST00000454240 LUZP6Q538Z0 58 aa7.13□□□□□ -1.27
SMARCC1-203ENST00000454240 LCE1EQ5T753 118 aa7.03□□□□□ -1.28
SMARCC1-203ENST00000454240 MUC5ACP98088 5654 aa6.95□□□□□ -1.3
SMARCC1-203ENST00000454240 KRTAP9-9Q9BYP9 154 aa6.94□□□□□ -1.3
SMARCC1-203ENST00000454240 MUC5BQ9HC84 5762 aaPredicted RBP6.78□□□□□ -1.32
SMARCC1-203ENST00000454240 LCE3DQ9BYE3 92 aa6.74□□□□□ -1.33
SMARCC1-203ENST00000454240 AHNAKQ09666 5890 aaKnown RBP6.7□□□□□ -1.34
SMARCC1-203ENST00000454240 KRTAP4-2Q9BYR5 136 aa6.6□□□□□ -1.35
SMARCC1-203ENST00000454240 LCE1BQ5T7P3 118 aa6.54□□□□□ -1.36
SMARCC1-203ENST00000454240 LCE1CQ5T751 118 aa6.53□□□□□ -1.36
SMARCC1-203ENST00000454240 LCE3EQ5T5B0 92 aa6.42□□□□□ -1.38
SMARCC1-203ENST00000454240 NDUFAF8A1L188 74 aa6.14□□□□□ -1.43
SMARCC1-203ENST00000454240 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.01□□□□□ -1.45
SMARCC1-203ENST00000454240 KRTAP5-11Q6L8G4 156 aa5.86□□□□□ -1.47
SMARCC1-203ENST00000454240 KRTAP4-12Q9BQ66 201 aa5.77□□□□□ -1.49
SMARCC1-203ENST00000454240 LCE1FQ5T754 118 aa5.6□□□□□ -1.51
SMARCC1-203ENST00000454240 KRTAP21-2Q3LI59 83 aa5.57□□□□□ -1.52
SMARCC1-203ENST00000454240 PRM1P04553 51 aa5.07□□□□□ -1.6
SMARCC1-203ENST00000454240 A0A0A0MQY5 61 aa5.05□□□□□ -1.6
SMARCC1-203ENST00000454240 PHGR1C9JFL3 82 aa5.05□□□□□ -1.6
SMARCC1-203ENST00000454240 INE1O15225 51 aa5.03□□□□□ -1.6
SMARCC1-203ENST00000454240 KRTAP4-4Q9BYR3 166 aa4.99□□□□□ -1.61
SMARCC1-203ENST00000454240 MUC19Q7Z5P9 8384 aa4.56□□□□□ -1.68
SMARCC1-203ENST00000454240 H3BS24 57 aa3.9□□□□□ -1.79
SMARCC1-203ENST00000454240 KRTAP21-1Q3LI58 79 aa3.57□□□□□ -1.84
SMARCC1-203ENST00000454240 MUC16Q8WXI7 14507 aa3.26□□□□□ -1.89
Retrieved 78 of 20,778 RNA–protein pairs in 17.7 ms