RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 KRTAP9-2Q9BYQ4 174 aa4.03□□□□□ -1.76
VTA1-203ENST00000452973 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
VTA1-203ENST00000452973 SPRR2FQ96RM1 72 aa4□□□□□ -1.77
VTA1-203ENST00000452973 DSTQ03001 7570 aaKnown RBP3.97□□□□□ -1.77
VTA1-203ENST00000452973 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
VTA1-203ENST00000452973 KRTAP19-3Q7Z4W3 81 aa3.95□□□□□ -1.78
VTA1-203ENST00000452973 KRTAP19-4Q3LI73 84 aa3.94□□□□□ -1.78
VTA1-203ENST00000452973 LOC100996750A0A140TA64 210 aa3.93□□□□□ -1.78
VTA1-203ENST00000452973 MT1MQ8N339 61 aa3.92□□□□□ -1.78
VTA1-203ENST00000452973 CRCT1Q9UGL9 99 aa3.91□□□□□ -1.78
VTA1-203ENST00000452973 MT1GP13640 62 aa3.91□□□□□ -1.78
VTA1-203ENST00000452973 MDN1Q9NU22 5596 aa3.83□□□□□ -1.8
VTA1-203ENST00000452973 LCE5AQ5TCM9 118 aa3.83□□□□□ -1.8
VTA1-203ENST00000452973 KRTAP2-3P0C7H8 128 aa3.77□□□□□ -1.81
VTA1-203ENST00000452973 KRTAP2-4Q9BYR9 128 aa3.77□□□□□ -1.81
VTA1-203ENST00000452973 KRTAP2-1Q9BYU5 128 aa3.77□□□□□ -1.81
VTA1-203ENST00000452973 KRTAP4-6Q9BYQ5 205 aa3.73□□□□□ -1.81
VTA1-203ENST00000452973 LCE1AQ5T7P2 110 aa3.71□□□□□ -1.82
VTA1-203ENST00000452973 SPRR2EP22531 72 aa3.69□□□□□ -1.82
VTA1-203ENST00000452973 KRTAP5-9P26371 169 aa3.69□□□□□ -1.82
VTA1-203ENST00000452973 SPRR2BP35325 72 aa3.69□□□□□ -1.82
VTA1-203ENST00000452973 SPRR2AP35326 72 aa3.69□□□□□ -1.82
VTA1-203ENST00000452973 SYNE1Q8NF91 8797 aaKnown RBP3.61□□□□□ -1.83
VTA1-203ENST00000452973 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.59□□□□□ -1.83
VTA1-203ENST00000452973 LCE3BQ5TA77 95 aa3.57□□□□□ -1.84
VTA1-203ENST00000452973 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
VTA1-203ENST00000452973 SPRR2DP22532 72 aa3.53□□□□□ -1.84
VTA1-203ENST00000452973 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.85
VTA1-203ENST00000452973 KRTAP6-3Q3LI67 103 aa3.51□□□□□ -1.85
VTA1-203ENST00000452973 KRTAP4-9Q9BYQ8 210 aa3.46□□□□□ -1.86
VTA1-203ENST00000452973 MT1AP04731 61 aa3.46□□□□□ -1.86
VTA1-203ENST00000452973 KRTAP5-5Q701N2 237 aaPredicted RBP3.43□□□□□ -1.86
VTA1-203ENST00000452973 KRTAP12-4P60329 112 aa3.38□□□□□ -1.87
VTA1-203ENST00000452973 OBSCNQ5VST9 7968 aa3.38□□□□□ -1.87
VTA1-203ENST00000452973 KRTAP9-7A8MTY7 169 aa3.33□□□□□ -1.88
VTA1-203ENST00000452973 NEBP20929 6669 aa3.29□□□□□ -1.88
VTA1-203ENST00000452973 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
VTA1-203ENST00000452973 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
VTA1-203ENST00000452973 LCE4AQ5TA78 99 aa3.24□□□□□ -1.89
VTA1-203ENST00000452973 KRTAP6-2Q3LI66 62 aa3.22□□□□□ -1.89
VTA1-203ENST00000452973 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
VTA1-203ENST00000452973 MT4P47944 62 aa3.16□□□□□ -1.9
VTA1-203ENST00000452973 MT3P25713 68 aa3.14□□□□□ -1.91
VTA1-203ENST00000452973 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
VTA1-203ENST00000452973 KRTAP5-4Q6L8H1 288 aa3.12□□□□□ -1.91
VTA1-203ENST00000452973 KRTAP9-9Q9BYP9 154 aa3.1□□□□□ -1.91
VTA1-203ENST00000452973 KRTAP2-2Q9BYT5 123 aa3□□□□□ -1.93
VTA1-203ENST00000452973 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
VTA1-203ENST00000452973 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
VTA1-203ENST00000452973 LCE1DQ5T752 114 aa2.97□□□□□ -1.93
VTA1-203ENST00000452973 PRM1P04553 51 aa2.96□□□□□ -1.94
VTA1-203ENST00000452973 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
VTA1-203ENST00000452973 KRTAP20-1Q3LI63 56 aa2.94□□□□□ -1.94
VTA1-203ENST00000452973 KRTAP5-2Q701N4 177 aa2.87□□□□□ -1.95
VTA1-203ENST00000452973 KRTAP5-3Q6L8H2 238 aa2.83□□□□□ -1.96
VTA1-203ENST00000452973 KRTAP4-2Q9BYR5 136 aa2.81□□□□□ -1.96
VTA1-203ENST00000452973 LCE1BQ5T7P3 118 aa2.65□□□□□ -1.98
VTA1-203ENST00000452973 KRTAP4-11Q9BYQ6 195 aa2.63□□□□□ -1.99
VTA1-203ENST00000452973 MUC5ACP98088 5654 aa2.62□□□□□ -1.99
VTA1-203ENST00000452973 LCE1FQ5T754 118 aa2.57□□□□□ -2
VTA1-203ENST00000452973 KRTAP5-1Q6L8H4 278 aa2.5□□□□□ -2.01
VTA1-203ENST00000452973 MUC19Q7Z5P9 8384 aa2.46□□□□□ -2.02
VTA1-203ENST00000452973 LCE1CQ5T751 118 aa2.44□□□□□ -2.02
VTA1-203ENST00000452973 KRTAP5-10Q6L8G5 202 aa2.44□□□□□ -2.02
VTA1-203ENST00000452973 AHNAK2Q8IVF2 5795 aa2.43□□□□□ -2.02
VTA1-203ENST00000452973 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
VTA1-203ENST00000452973 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
VTA1-203ENST00000452973 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
VTA1-203ENST00000452973 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
VTA1-203ENST00000452973 MUC5BQ9HC84 5762 aaPredicted RBP2.24□□□□□ -2.05
VTA1-203ENST00000452973 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
VTA1-203ENST00000452973 GPR98Q8WXG9 6306 aa2.15□□□□□ -2.07
VTA1-203ENST00000452973 KRTAP5-11Q6L8G4 156 aa2.11□□□□□ -2.07
VTA1-203ENST00000452973 PHGR1C9JFL3 82 aa1.84□□□□□ -2.12
VTA1-203ENST00000452973 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
VTA1-203ENST00000452973 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
VTA1-203ENST00000452973 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 97.2 ms