RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 KRTAP9-4Q9BYQ2 154 aa4.6□□□□□ -1.67
HMGB3-204ENST00000448905 C10orf95Q9H7T3 257 aa4.6□□□□□ -1.67
HMGB3-204ENST00000448905 LCE3AQ5TA76 89 aa4.56□□□□□ -1.68
HMGB3-204ENST00000448905 A0A1B0GU69 56 aa4.54□□□□□ -1.68
HMGB3-204ENST00000448905 KRTAP5-7Q6L8G8 165 aa4.53□□□□□ -1.68
HMGB3-204ENST00000448905 KRTAP5-3Q6L8H2 238 aa4.51□□□□□ -1.69
HMGB3-204ENST00000448905 A8MU10 97 aa4.49□□□□□ -1.69
HMGB3-204ENST00000448905 COX7CP15954 63 aa4.45□□□□□ -1.7
HMGB3-204ENST00000448905 KRTAP12-3P60328 96 aa4.44□□□□□ -1.7
HMGB3-204ENST00000448905 KRTAP4-7Q9BYR0 210 aa4.44□□□□□ -1.7
HMGB3-204ENST00000448905 SPRR5A0A1B0GTR4 108 aa4.42□□□□□ -1.7
HMGB3-204ENST00000448905 H7BZZ5 65 aa4.41□□□□□ -1.7
HMGB3-204ENST00000448905 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
HMGB3-204ENST00000448905 KRTAP20-2Q3LI61 65 aa4.4□□□□□ -1.71
HMGB3-204ENST00000448905 PRR15LQ9BU68 103 aa4.38□□□□□ -1.71
HMGB3-204ENST00000448905 KRTAP5-5Q701N2 237 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-204ENST00000448905 KRTAP19-4Q3LI73 84 aa4.27□□□□□ -1.73
HMGB3-204ENST00000448905 KRTAP25-1Q3LHN0 102 aa4.21□□□□□ -1.74
HMGB3-204ENST00000448905 UQCR11O14957 56 aa4.2□□□□□ -1.74
HMGB3-204ENST00000448905 LINC01558Q9Y6Z2 57 aa4.19□□□□□ -1.74
HMGB3-204ENST00000448905 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
HMGB3-204ENST00000448905 SYNE1Q8NF91 8797 aaKnown RBP4.17□□□□□ -1.74
HMGB3-204ENST00000448905 ANAPC13Q9BS18 74 aa4.17□□□□□ -1.74
HMGB3-204ENST00000448905 H3BS24 57 aa4.15□□□□□ -1.75
HMGB3-204ENST00000448905 ATP5EP56381 51 aaPredicted RBP4.15□□□□□ -1.75
HMGB3-204ENST00000448905 K7ERS5 55 aa4.12□□□□□ -1.75
HMGB3-204ENST00000448905 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
HMGB3-204ENST00000448905 KRTAP15-1Q3LI76 137 aa4.08□□□□□ -1.76
HMGB3-204ENST00000448905 MIR22HGQ0VDD5 57 aa4.06□□□□□ -1.76
HMGB3-204ENST00000448905 LCE3CQ5T5A8 94 aa4.06□□□□□ -1.76
HMGB3-204ENST00000448905 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
HMGB3-204ENST00000448905 CCDC179H3BU77 68 aa4.03□□□□□ -1.76
HMGB3-204ENST00000448905 KRTAP5-2Q701N4 177 aa4□□□□□ -1.77
HMGB3-204ENST00000448905 MT1AP04731 61 aa3.99□□□□□ -1.77
HMGB3-204ENST00000448905 PCP4P48539 62 aa3.99□□□□□ -1.77
HMGB3-204ENST00000448905 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
HMGB3-204ENST00000448905 KRTAP6-1Q3LI64 71 aa3.96□□□□□ -1.78
HMGB3-204ENST00000448905 AHNAKQ09666 5890 aaKnown RBP3.95□□□□□ -1.78
HMGB3-204ENST00000448905 MUC5ACP98088 5654 aa3.92□□□□□ -1.78
HMGB3-204ENST00000448905 TMEM258P61165 79 aa3.91□□□□□ -1.78
HMGB3-204ENST00000448905 MUC5BQ9HC84 5762 aaPredicted RBP3.9□□□□□ -1.78
HMGB3-204ENST00000448905 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.79
HMGB3-204ENST00000448905 KRTAP6-2Q3LI66 62 aa3.86□□□□□ -1.79
HMGB3-204ENST00000448905 V9GYY9 64 aa3.85□□□□□ -1.79
HMGB3-204ENST00000448905 RPS28P62857 69 aaKnown RBP3.84□□□□□ -1.79
HMGB3-204ENST00000448905 PSPHP1O15172 72 aa3.81□□□□□ -1.8
HMGB3-204ENST00000448905 CDC42SE1Q9NRR8 79 aa3.8□□□□□ -1.8
HMGB3-204ENST00000448905 Q1T7F1 81 aa3.79□□□□□ -1.8
HMGB3-204ENST00000448905 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
HMGB3-204ENST00000448905 MT3P25713 68 aa3.73□□□□□ -1.81
HMGB3-204ENST00000448905 ROMO1P60602 79 aa3.71□□□□□ -1.82
HMGB3-204ENST00000448905 A6NED7 52 aa3.7□□□□□ -1.82
HMGB3-204ENST00000448905 A0A0A0MQY5 61 aa3.65□□□□□ -1.83
HMGB3-204ENST00000448905 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
HMGB3-204ENST00000448905 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
HMGB3-204ENST00000448905 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
HMGB3-204ENST00000448905 LCE1CQ5T751 118 aa3.21□□□□□ -1.9
HMGB3-204ENST00000448905 PRO0628Q9UI54 55 aa3.09□□□□□ -1.91
HMGB3-204ENST00000448905 PRAC1Q96KF2 57 aa3.04□□□□□ -1.92
HMGB3-204ENST00000448905 PMAIP1Q13794 54 aa2.96□□□□□ -1.94
HMGB3-204ENST00000448905 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
HMGB3-204ENST00000448905 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
HMGB3-204ENST00000448905 KRTAP5-11Q6L8G4 156 aa2.89□□□□□ -1.95
HMGB3-204ENST00000448905 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.85□□□□□ -1.95
HMGB3-204ENST00000448905 BRK1Q8WUW1 75 aa2.84□□□□□ -1.95
HMGB3-204ENST00000448905 PHGR1C9JFL3 82 aa2.76□□□□□ -1.97
HMGB3-204ENST00000448905 KTN1-AS1Q86SY8 53 aa2.75□□□□□ -1.97
HMGB3-204ENST00000448905 LUZP6Q538Z0 58 aa2.72□□□□□ -1.97
HMGB3-204ENST00000448905 NDUFAF8A1L188 74 aa2.71□□□□□ -1.98
HMGB3-204ENST00000448905 LCE3EQ5T5B0 92 aa2.69□□□□□ -1.98
HMGB3-204ENST00000448905 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
HMGB3-204ENST00000448905 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
HMGB3-204ENST00000448905 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
HMGB3-204ENST00000448905 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
HMGB3-204ENST00000448905 INE1O15225 51 aa2.03□□□□□ -2.08
HMGB3-204ENST00000448905 PRM1P04553 51 aa1.84□□□□□ -2.11
HMGB3-204ENST00000448905 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 10.7 ms