RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 KRTAP19-3Q7Z4W3 81 aa8.18□□□□□ -1.1
CPSF4-204ENST00000436336 LCE1AQ5T7P2 110 aa8.17□□□□□ -1.1
CPSF4-204ENST00000436336 SPRR2EP22531 72 aa8.15□□□□□ -1.11
CPSF4-204ENST00000436336 SPRR2BP35325 72 aa8.15□□□□□ -1.11
CPSF4-204ENST00000436336 SPRR2AP35326 72 aa8.15□□□□□ -1.11
CPSF4-204ENST00000436336 MDN1Q9NU22 5596 aa8.09□□□□□ -1.11
CPSF4-204ENST00000436336 MT1GP13640 62 aa8.09□□□□□ -1.11
CPSF4-204ENST00000436336 KRTAP19-4Q3LI73 84 aa8.08□□□□□ -1.12
CPSF4-204ENST00000436336 LCE5AQ5TCM9 118 aa8.07□□□□□ -1.12
CPSF4-204ENST00000436336 MT1MQ8N339 61 aa7.96□□□□□ -1.14
CPSF4-204ENST00000436336 NEBP20929 6669 aa7.94□□□□□ -1.14
CPSF4-204ENST00000436336 LCE3CQ5T5A8 94 aa7.94□□□□□ -1.14
CPSF4-204ENST00000436336 KRTAP4-7Q9BYR0 210 aa7.87□□□□□ -1.15
CPSF4-204ENST00000436336 SPRR2DP22532 72 aa7.86□□□□□ -1.15
CPSF4-204ENST00000436336 KRTAP4-3Q9BYR4 195 aa7.75□□□□□ -1.17
CPSF4-204ENST00000436336 SPRR5A0A1B0GTR4 108 aa7.61□□□□□ -1.19
CPSF4-204ENST00000436336 DSTQ03001 7570 aaKnown RBP7.61□□□□□ -1.19
CPSF4-204ENST00000436336 LCE3BQ5TA77 95 aa7.58□□□□□ -1.2
CPSF4-204ENST00000436336 KRTAP2-3P0C7H8 128 aa7.52□□□□□ -1.21
CPSF4-204ENST00000436336 KRTAP2-4Q9BYR9 128 aa7.52□□□□□ -1.21
CPSF4-204ENST00000436336 KRTAP9-6A8MVA2 160 aa7.47□□□□□ -1.21
CPSF4-204ENST00000436336 KRTAP20-1Q3LI63 56 aa7.47□□□□□ -1.21
CPSF4-204ENST00000436336 LOC100996750A0A140TA64 210 aa7.41□□□□□ -1.22
CPSF4-204ENST00000436336 KRTAP2-2Q9BYT5 123 aa7.34□□□□□ -1.23
CPSF4-204ENST00000436336 KRTAP2-1Q9BYU5 128 aa7.34□□□□□ -1.23
CPSF4-204ENST00000436336 H3BS24 57 aa7.28□□□□□ -1.24
CPSF4-204ENST00000436336 KRTAP5-5Q701N2 237 aaPredicted RBP7.22□□□□□ -1.25
CPSF4-204ENST00000436336 LUZP6Q538Z0 58 aa7.19□□□□□ -1.26
CPSF4-204ENST00000436336 KRTAP5-4Q6L8H1 288 aa7.05□□□□□ -1.28
CPSF4-204ENST00000436336 LCE4AQ5TA78 99 aa7.01□□□□□ -1.29
CPSF4-204ENST00000436336 MT1AP04731 61 aa7□□□□□ -1.29
CPSF4-204ENST00000436336 KRTAP6-1Q3LI64 71 aa6.91□□□□□ -1.3
CPSF4-204ENST00000436336 SYNE1Q8NF91 8797 aaKnown RBP6.84□□□□□ -1.32
CPSF4-204ENST00000436336 MT4P47944 62 aa6.81□□□□□ -1.32
CPSF4-204ENST00000436336 KRTAP4-9Q9BYQ8 210 aa6.81□□□□□ -1.32
CPSF4-204ENST00000436336 KRTAP12-4P60329 112 aa6.79□□□□□ -1.32
CPSF4-204ENST00000436336 LCE1DQ5T752 114 aa6.76□□□□□ -1.33
CPSF4-204ENST00000436336 NDUFAF8A1L188 74 aa6.75□□□□□ -1.33
CPSF4-204ENST00000436336 KRTAP4-6Q9BYQ5 205 aa6.72□□□□□ -1.33
CPSF4-204ENST00000436336 KRTAP9-4Q9BYQ2 154 aa6.67□□□□□ -1.34
CPSF4-204ENST00000436336 HMCN1Q96RW7 5635 aa6.6□□□□□ -1.35
CPSF4-204ENST00000436336 KRTAP20-2Q3LI61 65 aa6.59□□□□□ -1.35
CPSF4-204ENST00000436336 KRTAP6-2Q3LI66 62 aa6.42□□□□□ -1.38
CPSF4-204ENST00000436336 MT3P25713 68 aa6.36□□□□□ -1.39
CPSF4-204ENST00000436336 KRTAP5-3Q6L8H2 238 aa6.36□□□□□ -1.39
CPSF4-204ENST00000436336 KRTAP5-2Q701N4 177 aa6.34□□□□□ -1.39
CPSF4-204ENST00000436336 A0A0A0MQY5 61 aa5.99□□□□□ -1.45
CPSF4-204ENST00000436336 AHNAK2Q8IVF2 5795 aa5.99□□□□□ -1.45
CPSF4-204ENST00000436336 LCE3DQ9BYE3 92 aa5.91□□□□□ -1.46
CPSF4-204ENST00000436336 OBSCNQ5VST9 7968 aa5.83□□□□□ -1.48
CPSF4-204ENST00000436336 KRTAP5-10Q6L8G5 202 aa5.79□□□□□ -1.48
CPSF4-204ENST00000436336 KRTAP4-11Q9BYQ6 195 aa5.79□□□□□ -1.48
CPSF4-204ENST00000436336 LCE3EQ5T5B0 92 aa5.71□□□□□ -1.49
CPSF4-204ENST00000436336 GPR98Q8WXG9 6306 aa5.62□□□□□ -1.51
CPSF4-204ENST00000436336 LCE1EQ5T753 118 aa5.62□□□□□ -1.51
CPSF4-204ENST00000436336 INE1O15225 51 aa5.6□□□□□ -1.51
CPSF4-204ENST00000436336 KRTAP5-8O75690 187 aa5.58□□□□□ -1.52
CPSF4-204ENST00000436336 KRTAP5-1Q6L8H4 278 aa5.51□□□□□ -1.53
CPSF4-204ENST00000436336 KRTAP5-7Q6L8G8 165 aa5.43□□□□□ -1.54
CPSF4-204ENST00000436336 MUC5ACP98088 5654 aa5.29□□□□□ -1.56
CPSF4-204ENST00000436336 KRTAP4-2Q9BYR5 136 aa5.23□□□□□ -1.57
CPSF4-204ENST00000436336 LCE1CQ5T751 118 aa5.22□□□□□ -1.57
CPSF4-204ENST00000436336 LCE1BQ5T7P3 118 aa5.22□□□□□ -1.57
CPSF4-204ENST00000436336 KRTAP9-9Q9BYP9 154 aa5.11□□□□□ -1.59
CPSF4-204ENST00000436336 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.86□□□□□ -1.63
CPSF4-204ENST00000436336 PRM1P04553 51 aa4.82□□□□□ -1.64
CPSF4-204ENST00000436336 MUC5BQ9HC84 5762 aaPredicted RBP4.79□□□□□ -1.64
CPSF4-204ENST00000436336 KRTAP5-11Q6L8G4 156 aa4.64□□□□□ -1.67
CPSF4-204ENST00000436336 AHNAKQ09666 5890 aaKnown RBP4.61□□□□□ -1.67
CPSF4-204ENST00000436336 KRTAP21-2Q3LI59 83 aa4.54□□□□□ -1.68
CPSF4-204ENST00000436336 KRTAP4-12Q9BQ66 201 aa4.4□□□□□ -1.71
CPSF4-204ENST00000436336 LCE1FQ5T754 118 aa4.29□□□□□ -1.72
CPSF4-204ENST00000436336 KRTAP4-4Q9BYR3 166 aa4.02□□□□□ -1.77
CPSF4-204ENST00000436336 PHGR1C9JFL3 82 aa3.98□□□□□ -1.77
CPSF4-204ENST00000436336 MUC19Q7Z5P9 8384 aa3.51□□□□□ -1.85
CPSF4-204ENST00000436336 KRTAP21-1Q3LI58 79 aa2.89□□□□□ -1.95
CPSF4-204ENST00000436336 MUC16Q8WXI7 14507 aa2.55□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 72.1 ms