RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 KRTAP19-3Q7Z4W3 81 aa4.48□□□□□ -1.69
PTCH1-207ENST00000429896 MT1EP04732 61 aa4.45□□□□□ -1.7
PTCH1-207ENST00000429896 KRTAP9-7A8MTY7 169 aa4.41□□□□□ -1.7
PTCH1-207ENST00000429896 MT1LQ93083 61 aa4.39□□□□□ -1.71
PTCH1-207ENST00000429896 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.38□□□□□ -1.71
PTCH1-207ENST00000429896 KRTAP6-3Q3LI67 103 aa4.37□□□□□ -1.71
PTCH1-207ENST00000429896 KRTAP12-4P60329 112 aa4.33□□□□□ -1.72
PTCH1-207ENST00000429896 MT1MQ8N339 61 aa4.28□□□□□ -1.72
PTCH1-207ENST00000429896 USH2AO75445 5202 aa4.25□□□□□ -1.73
PTCH1-207ENST00000429896 KRTAP4-7Q9BYR0 210 aa4.25□□□□□ -1.73
PTCH1-207ENST00000429896 KRTAP19-7Q3SYF9 63 aa4.22□□□□□ -1.73
PTCH1-207ENST00000429896 KRTAP20-1Q3LI63 56 aa4.22□□□□□ -1.73
PTCH1-207ENST00000429896 MT4P47944 62 aa4.16□□□□□ -1.74
PTCH1-207ENST00000429896 LCE3DQ9BYE3 92 aa4.16□□□□□ -1.74
PTCH1-207ENST00000429896 LCE1AQ5T7P2 110 aa4.14□□□□□ -1.75
PTCH1-207ENST00000429896 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
PTCH1-207ENST00000429896 KRTAP4-3Q9BYR4 195 aa4.11□□□□□ -1.75
PTCH1-207ENST00000429896 KRTAP2-3P0C7H8 128 aa4.1□□□□□ -1.75
PTCH1-207ENST00000429896 KRTAP2-4Q9BYR9 128 aa4.1□□□□□ -1.75
PTCH1-207ENST00000429896 LOC100996750A0A140TA64 210 aa4.03□□□□□ -1.76
PTCH1-207ENST00000429896 LCE3EQ5T5B0 92 aa4.03□□□□□ -1.76
PTCH1-207ENST00000429896 LCE5AQ5TCM9 118 aa3.99□□□□□ -1.77
PTCH1-207ENST00000429896 LCE1BQ5T7P3 118 aa3.99□□□□□ -1.77
PTCH1-207ENST00000429896 SSPOA2VEC9 5147 aa3.98□□□□□ -1.77
PTCH1-207ENST00000429896 KRTAP2-2Q9BYT5 123 aa3.96□□□□□ -1.78
PTCH1-207ENST00000429896 KRTAP2-1Q9BYU5 128 aa3.96□□□□□ -1.78
PTCH1-207ENST00000429896 FCGBPQ9Y6R7 5405 aaPredicted RBP3.93□□□□□ -1.78
PTCH1-207ENST00000429896 LCE1DQ5T752 114 aa3.93□□□□□ -1.78
PTCH1-207ENST00000429896 MACF1Q9UPN3 7388 aaKnown RBP3.93□□□□□ -1.78
PTCH1-207ENST00000429896 KRTAP5-9P26371 169 aa3.92□□□□□ -1.78
PTCH1-207ENST00000429896 PRM1P04553 51 aa3.91□□□□□ -1.78
PTCH1-207ENST00000429896 MT3P25713 68 aa3.89□□□□□ -1.79
PTCH1-207ENST00000429896 MT1AP04731 61 aa3.88□□□□□ -1.79
PTCH1-207ENST00000429896 NEBP20929 6669 aa3.86□□□□□ -1.79
PTCH1-207ENST00000429896 LCE4AQ5TA78 99 aa3.85□□□□□ -1.79
PTCH1-207ENST00000429896 KRTAP4-9Q9BYQ8 210 aa3.79□□□□□ -1.8
PTCH1-207ENST00000429896 KRTAP9-6A8MVA2 160 aa3.71□□□□□ -1.82
PTCH1-207ENST00000429896 KMT2DO14686 5537 aa3.7□□□□□ -1.82
PTCH1-207ENST00000429896 KRTAP6-1Q3LI64 71 aa3.68□□□□□ -1.82
PTCH1-207ENST00000429896 KRTAP9-4Q9BYQ2 154 aa3.65□□□□□ -1.83
PTCH1-207ENST00000429896 KRTAP6-2Q3LI66 62 aa3.59□□□□□ -1.83
PTCH1-207ENST00000429896 MUC12Q9UKN1 5478 aa3.49□□□□□ -1.85
PTCH1-207ENST00000429896 LCE1CQ5T751 118 aa3.49□□□□□ -1.85
PTCH1-207ENST00000429896 LCE1EQ5T753 118 aa3.49□□□□□ -1.85
PTCH1-207ENST00000429896 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
PTCH1-207ENST00000429896 MDN1Q9NU22 5596 aa3.41□□□□□ -1.86
PTCH1-207ENST00000429896 KRTAP4-6Q9BYQ5 205 aa3.39□□□□□ -1.87
PTCH1-207ENST00000429896 KRTAP20-2Q3LI61 65 aa3.35□□□□□ -1.87
PTCH1-207ENST00000429896 DSTQ03001 7570 aaKnown RBP3.31□□□□□ -1.88
PTCH1-207ENST00000429896 SYNE1Q8NF91 8797 aaKnown RBP3.3□□□□□ -1.88
PTCH1-207ENST00000429896 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
PTCH1-207ENST00000429896 OBSCNQ5VST9 7968 aa3.22□□□□□ -1.89
PTCH1-207ENST00000429896 KRTAP5-5Q701N2 237 aaPredicted RBP3.18□□□□□ -1.9
PTCH1-207ENST00000429896 KRTAP9-9Q9BYP9 154 aa3.18□□□□□ -1.9
PTCH1-207ENST00000429896 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
PTCH1-207ENST00000429896 GPR98Q8WXG9 6306 aa2.97□□□□□ -1.93
PTCH1-207ENST00000429896 KRTAP5-3Q6L8H2 238 aa2.91□□□□□ -1.94
PTCH1-207ENST00000429896 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
PTCH1-207ENST00000429896 KRTAP4-12Q9BQ66 201 aa2.84□□□□□ -1.96
PTCH1-207ENST00000429896 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.96
PTCH1-207ENST00000429896 HMCN1Q96RW7 5635 aa2.77□□□□□ -1.97
PTCH1-207ENST00000429896 KRTAP5-2Q701N4 177 aa2.73□□□□□ -1.97
PTCH1-207ENST00000429896 KRTAP5-8O75690 187 aa2.64□□□□□ -1.99
PTCH1-207ENST00000429896 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
PTCH1-207ENST00000429896 MUC5ACP98088 5654 aa2.53□□□□□ -2
PTCH1-207ENST00000429896 KRTAP5-10Q6L8G5 202 aa2.48□□□□□ -2.01
PTCH1-207ENST00000429896 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.02
PTCH1-207ENST00000429896 KRTAP5-7Q6L8G8 165 aa2.38□□□□□ -2.03
PTCH1-207ENST00000429896 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
PTCH1-207ENST00000429896 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
PTCH1-207ENST00000429896 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
PTCH1-207ENST00000429896 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
PTCH1-207ENST00000429896 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
PTCH1-207ENST00000429896 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.1□□□□□ -2.07
PTCH1-207ENST00000429896 KRTAP21-2Q3LI59 83 aa2.08□□□□□ -2.08
PTCH1-207ENST00000429896 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
PTCH1-207ENST00000429896 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 81.4 ms