RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 KRTAP12-3P60328 96 aa1.17□□□□□ -2.22
VPS41-206ENST00000418457 RNF213Q63HN8 5207 aa1.17□□□□□ -2.22
VPS41-206ENST00000418457 MUC19Q7Z5P9 8384 aa1.16□□□□□ -2.22
VPS41-206ENST00000418457 KRTAP6-3Q3LI67 103 aa1.15□□□□□ -2.23
VPS41-206ENST00000418457 KRTAP5-7Q6L8G8 165 aa1.15□□□□□ -2.23
VPS41-206ENST00000418457 PLAC4Q8WY50 150 aa1.15□□□□□ -2.23
VPS41-206ENST00000418457 PRO2289Q9P1D8 64 aa1.15□□□□□ -2.23
VPS41-206ENST00000418457 DMBT1Q9UGM3 2413 aaPredicted RBP1.15□□□□□ -2.23
VPS41-206ENST00000418457 LRP2P98164 4655 aa1.15□□□□□ -2.23
VPS41-206ENST00000418457 KRTAP12-4P60329 112 aa1.14□□□□□ -2.23
VPS41-206ENST00000418457 LPAP08519 4548 aa1.13□□□□□ -2.23
VPS41-206ENST00000418457 Q5VSD8 79 aa1.12□□□□□ -2.23
VPS41-206ENST00000418457 MUC17Q685J3 4493 aa1.11□□□□□ -2.23
VPS41-206ENST00000418457 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
VPS41-206ENST00000418457 MUC2Q02817 5179 aa1.1□□□□□ -2.23
VPS41-206ENST00000418457 MT1HL1P0DM35 61 aa1.09□□□□□ -2.23
VPS41-206ENST00000418457 TNP1P09430 55 aa1.08□□□□□ -2.24
VPS41-206ENST00000418457 FLGP20930 4061 aaPredicted RBP1.07□□□□□ -2.24
VPS41-206ENST00000418457 INE1O15225 51 aa1.06□□□□□ -2.24
VPS41-206ENST00000418457 KRTAP5-8O75690 187 aa1.03□□□□□ -2.24
VPS41-206ENST00000418457 KRTAP19-2Q3LHN2 52 aa1.01□□□□□ -2.25
VPS41-206ENST00000418457 SPRR2GQ9BYE4 73 aa0.99□□□□□ -2.25
VPS41-206ENST00000418457 KRTAP4-1Q9BYQ7 146 aa0.99□□□□□ -2.25
VPS41-206ENST00000418457 GPR98Q8WXG9 6306 aa0.99□□□□□ -2.25
VPS41-206ENST00000418457 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
VPS41-206ENST00000418457 KRTAP8-1Q8IUC2 63 aa0.98□□□□□ -2.25
VPS41-206ENST00000418457 CRCT1Q9UGL9 99 aa0.97□□□□□ -2.25
VPS41-206ENST00000418457 USH2AO75445 5202 aa0.96□□□□□ -2.26
VPS41-206ENST00000418457 FSIP2Q5CZC0 6907 aa0.96□□□□□ -2.26
VPS41-206ENST00000418457 SSPOA2VEC9 5147 aa0.95□□□□□ -2.26
VPS41-206ENST00000418457 KRTAP19-8Q3LI54 63 aa0.94□□□□□ -2.26
VPS41-206ENST00000418457 M0R2T5 61 aa0.93□□□□□ -2.26
VPS41-206ENST00000418457 MT1HP80294 61 aa0.92□□□□□ -2.26
VPS41-206ENST00000418457 FCGBPQ9Y6R7 5405 aaPredicted RBP0.91□□□□□ -2.26
VPS41-206ENST00000418457 MT2AP02795 61 aa0.91□□□□□ -2.26
VPS41-206ENST00000418457 MT1FP04733 61 aa0.9□□□□□ -2.27
VPS41-206ENST00000418457 MT1XP80297 61 aa0.9□□□□□ -2.27
VPS41-206ENST00000418457 MT1BP07438 61 aa0.89□□□□□ -2.27
VPS41-206ENST00000418457 KRTAP2-3P0C7H8 128 aa0.86□□□□□ -2.27
VPS41-206ENST00000418457 KRTAP2-4Q9BYR9 128 aa0.86□□□□□ -2.27
VPS41-206ENST00000418457 KRTAP2-1Q9BYU5 128 aa0.86□□□□□ -2.27
VPS41-206ENST00000418457 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
VPS41-206ENST00000418457 MUC12Q9UKN1 5478 aa0.85□□□□□ -2.27
VPS41-206ENST00000418457 MACF1Q9UPN3 7388 aaKnown RBP0.85□□□□□ -2.27
VPS41-206ENST00000418457 MDN1Q9NU22 5596 aa0.83□□□□□ -2.28
VPS41-206ENST00000418457 KMT2DO14686 5537 aa0.8□□□□□ -2.28
VPS41-206ENST00000418457 SYNE2Q8WXH0 6885 aaKnown RBP0.8□□□□□ -2.28
VPS41-206ENST00000418457 MT1EP04732 61 aa0.8□□□□□ -2.28
VPS41-206ENST00000418457 KRTAP19-6Q3LI70 58 aa0.8□□□□□ -2.28
VPS41-206ENST00000418457 KRTAP19-7Q3SYF9 63 aa0.8□□□□□ -2.28
VPS41-206ENST00000418457 KRTAP20-1Q3LI63 56 aa0.79□□□□□ -2.28
VPS41-206ENST00000418457 MT1LQ93083 61 aa0.79□□□□□ -2.28
VPS41-206ENST00000418457 NEBP20929 6669 aa0.78□□□□□ -2.29
VPS41-206ENST00000418457 AHNAKQ09666 5890 aaKnown RBP0.77□□□□□ -2.29
VPS41-206ENST00000418457 HMCN1Q96RW7 5635 aa0.75□□□□□ -2.29
VPS41-206ENST00000418457 MT1GP13640 62 aa0.75□□□□□ -2.29
VPS41-206ENST00000418457 MUC5BQ9HC84 5762 aaPredicted RBP0.74□□□□□ -2.29
VPS41-206ENST00000418457 MT1AP04731 61 aa0.74□□□□□ -2.29
VPS41-206ENST00000418457 KRTAP19-3Q7Z4W3 81 aa0.73□□□□□ -2.29
VPS41-206ENST00000418457 MT1MQ8N339 61 aa0.73□□□□□ -2.29
VPS41-206ENST00000418457 SPRR2EP22531 72 aa0.71□□□□□ -2.3
VPS41-206ENST00000418457 SPRR2BP35325 72 aa0.71□□□□□ -2.3
VPS41-206ENST00000418457 SPRR2AP35326 72 aa0.71□□□□□ -2.3
VPS41-206ENST00000418457 SPRR2FQ96RM1 72 aa0.71□□□□□ -2.3
VPS41-206ENST00000418457 SPRR2DP22532 72 aa0.69□□□□□ -2.3
VPS41-206ENST00000418457 AHNAK2Q8IVF2 5795 aa0.67□□□□□ -2.3
VPS41-206ENST00000418457 PRM1P04553 51 aa0.67□□□□□ -2.3
VPS41-206ENST00000418457 DSTQ03001 7570 aaKnown RBP0.67□□□□□ -2.3
VPS41-206ENST00000418457 KRTAP5-10Q6L8G5 202 aa0.66□□□□□ -2.3
VPS41-206ENST00000418457 KRTAP6-1Q3LI64 71 aa0.65□□□□□ -2.31
VPS41-206ENST00000418457 SYNE1Q8NF91 8797 aaKnown RBP0.64□□□□□ -2.31
VPS41-206ENST00000418457 MT4P47944 62 aa0.63□□□□□ -2.31
VPS41-206ENST00000418457 KRTAP6-2Q3LI66 62 aa0.63□□□□□ -2.31
VPS41-206ENST00000418457 KRTAP20-2Q3LI61 65 aa0.57□□□□□ -2.32
VPS41-206ENST00000418457 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
VPS41-206ENST00000418457 MUC5ACP98088 5654 aa0.56□□□□□ -2.32
VPS41-206ENST00000418457 KRTAP21-1Q3LI58 79 aa0.45□□□□□ -2.34
VPS41-206ENST00000418457 PHGR1C9JFL3 82 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 71.2 ms