RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 TMEM258P61165 79 aa6.12□□□□□ -1.43
PDLIM2-208ENST00000416159 MT4P47944 62 aa6.11□□□□□ -1.43
PDLIM2-208ENST00000416159 ATP5EP56381 51 aaPredicted RBP6.11□□□□□ -1.43
PDLIM2-208ENST00000416159 KRTAP4-3Q9BYR4 195 aa6.08□□□□□ -1.44
PDLIM2-208ENST00000416159 LINC01558Q9Y6Z2 57 aa6.05□□□□□ -1.44
PDLIM2-208ENST00000416159 KRTAP5-4Q6L8H1 288 aa6.04□□□□□ -1.44
PDLIM2-208ENST00000416159 HMCN1Q96RW7 5635 aa6.02□□□□□ -1.45
PDLIM2-208ENST00000416159 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
PDLIM2-208ENST00000416159 UQCR11O14957 56 aa5.94□□□□□ -1.46
PDLIM2-208ENST00000416159 KRTAP4-6Q9BYQ5 205 aa5.92□□□□□ -1.46
PDLIM2-208ENST00000416159 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
PDLIM2-208ENST00000416159 AHNAK2Q8IVF2 5795 aa5.85□□□□□ -1.47
PDLIM2-208ENST00000416159 RPS28P62857 69 aaKnown RBP5.83□□□□□ -1.48
PDLIM2-208ENST00000416159 KRTAP5-10Q6L8G5 202 aa5.82□□□□□ -1.48
PDLIM2-208ENST00000416159 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
PDLIM2-208ENST00000416159 MIR22HGQ0VDD5 57 aa5.78□□□□□ -1.48
PDLIM2-208ENST00000416159 K7ERS5 55 aa5.73□□□□□ -1.49
PDLIM2-208ENST00000416159 KRTAP5-5Q701N2 237 aaPredicted RBP5.73□□□□□ -1.49
PDLIM2-208ENST00000416159 V9GYY9 64 aa5.71□□□□□ -1.5
PDLIM2-208ENST00000416159 KRTAP20-2Q3LI61 65 aa5.7□□□□□ -1.5
PDLIM2-208ENST00000416159 KRTAP19-4Q3LI73 84 aa5.7□□□□□ -1.5
PDLIM2-208ENST00000416159 SPRR5A0A1B0GTR4 108 aa5.69□□□□□ -1.5
PDLIM2-208ENST00000416159 Q1T7F1 81 aa5.67□□□□□ -1.5
PDLIM2-208ENST00000416159 KRTAP5-3Q6L8H2 238 aa5.67□□□□□ -1.5
PDLIM2-208ENST00000416159 KRTAP12-4P60329 112 aa5.66□□□□□ -1.5
PDLIM2-208ENST00000416159 KRTAP5-7Q6L8G8 165 aa5.62□□□□□ -1.51
PDLIM2-208ENST00000416159 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
PDLIM2-208ENST00000416159 LOC100996750A0A140TA64 210 aa5.6□□□□□ -1.51
PDLIM2-208ENST00000416159 PSPHP1O15172 72 aa5.57□□□□□ -1.52
PDLIM2-208ENST00000416159 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
PDLIM2-208ENST00000416159 SYNE1Q8NF91 8797 aaKnown RBP5.52□□□□□ -1.53
PDLIM2-208ENST00000416159 LCE3CQ5T5A8 94 aa5.49□□□□□ -1.53
PDLIM2-208ENST00000416159 A6NED7 52 aa5.42□□□□□ -1.54
PDLIM2-208ENST00000416159 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
PDLIM2-208ENST00000416159 MT1AP04731 61 aa5.33□□□□□ -1.56
PDLIM2-208ENST00000416159 ROMO1P60602 79 aa5.29□□□□□ -1.56
PDLIM2-208ENST00000416159 KRTAP6-1Q3LI64 71 aa5.29□□□□□ -1.56
PDLIM2-208ENST00000416159 KRTAP5-2Q701N4 177 aa5.27□□□□□ -1.57
PDLIM2-208ENST00000416159 KRTAP4-11Q9BYQ6 195 aa5.24□□□□□ -1.57
PDLIM2-208ENST00000416159 BRK1Q8WUW1 75 aa5.21□□□□□ -1.58
PDLIM2-208ENST00000416159 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
PDLIM2-208ENST00000416159 KRTAP9-6A8MVA2 160 aa5.15□□□□□ -1.59
PDLIM2-208ENST00000416159 PRO0628Q9UI54 55 aa5.1□□□□□ -1.59
PDLIM2-208ENST00000416159 KRTAP6-2Q3LI66 62 aa5.07□□□□□ -1.6
PDLIM2-208ENST00000416159 KRTAP5-8O75690 187 aa5.06□□□□□ -1.6
PDLIM2-208ENST00000416159 SVIPQ8NHG7 77 aa4.95□□□□□ -1.62
PDLIM2-208ENST00000416159 PMAIP1Q13794 54 aa4.93□□□□□ -1.62
PDLIM2-208ENST00000416159 MT3P25713 68 aa4.9□□□□□ -1.63
PDLIM2-208ENST00000416159 KRTAP9-9Q9BYP9 154 aa4.85□□□□□ -1.63
PDLIM2-208ENST00000416159 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
PDLIM2-208ENST00000416159 MUC5BQ9HC84 5762 aaPredicted RBP4.83□□□□□ -1.64
PDLIM2-208ENST00000416159 AHNAKQ09666 5890 aaKnown RBP4.8□□□□□ -1.64
PDLIM2-208ENST00000416159 MUC5ACP98088 5654 aa4.8□□□□□ -1.64
PDLIM2-208ENST00000416159 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
PDLIM2-208ENST00000416159 KTN1-AS1Q86SY8 53 aa4.71□□□□□ -1.66
PDLIM2-208ENST00000416159 PRAC1Q96KF2 57 aa4.59□□□□□ -1.67
PDLIM2-208ENST00000416159 LCE1EQ5T753 118 aa4.52□□□□□ -1.69
PDLIM2-208ENST00000416159 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
PDLIM2-208ENST00000416159 LCE1BQ5T7P3 118 aa4.25□□□□□ -1.73
PDLIM2-208ENST00000416159 LCE1CQ5T751 118 aa4.19□□□□□ -1.74
PDLIM2-208ENST00000416159 LCE3DQ9BYE3 92 aa3.94□□□□□ -1.78
PDLIM2-208ENST00000416159 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.79
PDLIM2-208ENST00000416159 LUZP6Q538Z0 58 aa3.85□□□□□ -1.79
PDLIM2-208ENST00000416159 KRTAP5-11Q6L8G4 156 aa3.8□□□□□ -1.8
PDLIM2-208ENST00000416159 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
PDLIM2-208ENST00000416159 LCE1FQ5T754 118 aa3.75□□□□□ -1.81
PDLIM2-208ENST00000416159 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
PDLIM2-208ENST00000416159 NDUFAF8A1L188 74 aa3.67□□□□□ -1.82
PDLIM2-208ENST00000416159 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
PDLIM2-208ENST00000416159 PHGR1C9JFL3 82 aa3.4□□□□□ -1.87
PDLIM2-208ENST00000416159 H3BS24 57 aa3.38□□□□□ -1.87
PDLIM2-208ENST00000416159 A0A0A0MQY5 61 aa3.26□□□□□ -1.89
PDLIM2-208ENST00000416159 KRTAP4-4Q9BYR3 166 aa3.2□□□□□ -1.9
PDLIM2-208ENST00000416159 INE1O15225 51 aa3.06□□□□□ -1.92
PDLIM2-208ENST00000416159 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
PDLIM2-208ENST00000416159 PRM1P04553 51 aa2.67□□□□□ -1.98
PDLIM2-208ENST00000416159 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
PDLIM2-208ENST00000416159 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 127.6 ms