RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 KRTAP12-3P60328 96 aa5.71□□□□□ -1.5
SHMT2-202ENST00000414700 KRTAP5-9P26371 169 aa5.7□□□□□ -1.5
SHMT2-202ENST00000414700 MDN1Q9NU22 5596 aa5.68□□□□□ -1.5
SHMT2-202ENST00000414700 MT1EP04732 61 aa5.67□□□□□ -1.5
SHMT2-202ENST00000414700 KRTAP6-3Q3LI67 103 aa5.67□□□□□ -1.5
SHMT2-202ENST00000414700 KRTAP9-7A8MTY7 169 aa5.65□□□□□ -1.5
SHMT2-202ENST00000414700 MT1LQ93083 61 aa5.53□□□□□ -1.52
SHMT2-202ENST00000414700 LCE1AQ5T7P2 110 aa5.5□□□□□ -1.53
SHMT2-202ENST00000414700 KRTAP19-3Q7Z4W3 81 aa5.48□□□□□ -1.53
SHMT2-202ENST00000414700 SPRR2EP22531 72 aa5.47□□□□□ -1.53
SHMT2-202ENST00000414700 SPRR2BP35325 72 aa5.47□□□□□ -1.53
SHMT2-202ENST00000414700 SPRR2AP35326 72 aa5.47□□□□□ -1.53
SHMT2-202ENST00000414700 LCE5AQ5TCM9 118 aa5.43□□□□□ -1.54
SHMT2-202ENST00000414700 NEBP20929 6669 aa5.42□□□□□ -1.54
SHMT2-202ENST00000414700 DSTQ03001 7570 aaKnown RBP5.41□□□□□ -1.54
SHMT2-202ENST00000414700 MT1GP13640 62 aa5.4□□□□□ -1.55
SHMT2-202ENST00000414700 KRTAP4-7Q9BYR0 210 aa5.4□□□□□ -1.55
SHMT2-202ENST00000414700 MT1MQ8N339 61 aa5.36□□□□□ -1.55
SHMT2-202ENST00000414700 LCE3CQ5T5A8 94 aa5.32□□□□□ -1.56
SHMT2-202ENST00000414700 KRTAP4-3Q9BYR4 195 aa5.31□□□□□ -1.56
SHMT2-202ENST00000414700 SPRR2DP22532 72 aa5.26□□□□□ -1.57
SHMT2-202ENST00000414700 KRTAP19-4Q3LI73 84 aa5.24□□□□□ -1.57
SHMT2-202ENST00000414700 KRTAP2-3P0C7H8 128 aa5.14□□□□□ -1.59
SHMT2-202ENST00000414700 KRTAP2-4Q9BYR9 128 aa5.14□□□□□ -1.59
SHMT2-202ENST00000414700 KRTAP2-1Q9BYU5 128 aa5.14□□□□□ -1.59
SHMT2-202ENST00000414700 KRTAP9-6A8MVA2 160 aa5.11□□□□□ -1.59
SHMT2-202ENST00000414700 LOC100996750A0A140TA64 210 aa5.08□□□□□ -1.6
SHMT2-202ENST00000414700 LCE3BQ5TA77 95 aa5.07□□□□□ -1.6
SHMT2-202ENST00000414700 KRTAP20-1Q3LI63 56 aa4.97□□□□□ -1.61
SHMT2-202ENST00000414700 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
SHMT2-202ENST00000414700 KRTAP5-5Q701N2 237 aaPredicted RBP4.85□□□□□ -1.63
SHMT2-202ENST00000414700 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
SHMT2-202ENST00000414700 KRTAP5-4Q6L8H1 288 aa4.72□□□□□ -1.65
SHMT2-202ENST00000414700 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
SHMT2-202ENST00000414700 MT1AP04731 61 aa4.67□□□□□ -1.66
SHMT2-202ENST00000414700 KRTAP4-9Q9BYQ8 210 aa4.65□□□□□ -1.67
SHMT2-202ENST00000414700 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
SHMT2-202ENST00000414700 MT4P47944 62 aa4.62□□□□□ -1.67
SHMT2-202ENST00000414700 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
SHMT2-202ENST00000414700 KRTAP4-6Q9BYQ5 205 aa4.58□□□□□ -1.68
SHMT2-202ENST00000414700 LCE1DQ5T752 114 aa4.56□□□□□ -1.68
SHMT2-202ENST00000414700 HMCN1Q96RW7 5635 aa4.56□□□□□ -1.68
SHMT2-202ENST00000414700 KRTAP9-4Q9BYQ2 154 aa4.46□□□□□ -1.7
SHMT2-202ENST00000414700 KRTAP20-2Q3LI61 65 aa4.43□□□□□ -1.7
SHMT2-202ENST00000414700 KRTAP6-2Q3LI66 62 aa4.34□□□□□ -1.71
SHMT2-202ENST00000414700 KRTAP5-3Q6L8H2 238 aa4.28□□□□□ -1.72
SHMT2-202ENST00000414700 OBSCNQ5VST9 7968 aa4.28□□□□□ -1.72
SHMT2-202ENST00000414700 KRTAP5-2Q701N4 177 aa4.24□□□□□ -1.73
SHMT2-202ENST00000414700 MT3P25713 68 aa4.22□□□□□ -1.73
SHMT2-202ENST00000414700 PRM1P04553 51 aa4.14□□□□□ -1.75
SHMT2-202ENST00000414700 LCE3DQ9BYE3 92 aa4.14□□□□□ -1.75
SHMT2-202ENST00000414700 LCE3EQ5T5B0 92 aa4.13□□□□□ -1.75
SHMT2-202ENST00000414700 AHNAK2Q8IVF2 5795 aa4.11□□□□□ -1.75
SHMT2-202ENST00000414700 KRTAP5-10Q6L8G5 202 aa3.9□□□□□ -1.79
SHMT2-202ENST00000414700 KRTAP4-11Q9BYQ6 195 aa3.89□□□□□ -1.79
SHMT2-202ENST00000414700 GPR98Q8WXG9 6306 aa3.85□□□□□ -1.79
SHMT2-202ENST00000414700 KRTAP5-8O75690 187 aa3.76□□□□□ -1.81
SHMT2-202ENST00000414700 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
SHMT2-202ENST00000414700 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
SHMT2-202ENST00000414700 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
SHMT2-202ENST00000414700 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
SHMT2-202ENST00000414700 LCE1BQ5T7P3 118 aa3.54□□□□□ -1.84
SHMT2-202ENST00000414700 KRTAP4-2Q9BYR5 136 aa3.53□□□□□ -1.84
SHMT2-202ENST00000414700 LCE1CQ5T751 118 aa3.48□□□□□ -1.85
SHMT2-202ENST00000414700 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
SHMT2-202ENST00000414700 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
SHMT2-202ENST00000414700 MUC5BQ9HC84 5762 aaPredicted RBP3.33□□□□□ -1.88
SHMT2-202ENST00000414700 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
SHMT2-202ENST00000414700 AHNAKQ09666 5890 aaKnown RBP3.13□□□□□ -1.91
SHMT2-202ENST00000414700 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.92
SHMT2-202ENST00000414700 KRTAP21-2Q3LI59 83 aa3.07□□□□□ -1.92
SHMT2-202ENST00000414700 KRTAP4-12Q9BQ66 201 aa3.02□□□□□ -1.93
SHMT2-202ENST00000414700 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
SHMT2-202ENST00000414700 KRTAP21-1Q3LI58 79 aa2.68□□□□□ -1.98
SHMT2-202ENST00000414700 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
SHMT2-202ENST00000414700 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
SHMT2-202ENST00000414700 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 101 ms