RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 SPINT4Q6UDR6 99 aa4.13□□□□□ -1.75
LIMS2-210ENST00000413578 C10orf95Q9H7T3 257 aa4.13□□□□□ -1.75
LIMS2-210ENST00000413578 LCE3AQ5TA76 89 aa4.12□□□□□ -1.75
LIMS2-210ENST00000413578 PCP4P48539 62 aa4.11□□□□□ -1.75
LIMS2-210ENST00000413578 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
LIMS2-210ENST00000413578 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
LIMS2-210ENST00000413578 KRTAP5-5Q701N2 237 aaPredicted RBP4.07□□□□□ -1.76
LIMS2-210ENST00000413578 A0A1B0GU33 70 aa4.04□□□□□ -1.76
LIMS2-210ENST00000413578 SEC61GP60059 68 aa4.04□□□□□ -1.76
LIMS2-210ENST00000413578 SERP1Q9Y6X1 66 aa4.03□□□□□ -1.76
LIMS2-210ENST00000413578 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
LIMS2-210ENST00000413578 SVIPQ8NHG7 77 aa4.01□□□□□ -1.77
LIMS2-210ENST00000413578 A0A1B0GU69 56 aa4□□□□□ -1.77
LIMS2-210ENST00000413578 TNP1P09430 55 aa3.99□□□□□ -1.77
LIMS2-210ENST00000413578 KRTAP12-4P60329 112 aa3.96□□□□□ -1.78
LIMS2-210ENST00000413578 KRTAP12-3P60328 96 aa3.95□□□□□ -1.78
LIMS2-210ENST00000413578 LINC01558Q9Y6Z2 57 aa3.94□□□□□ -1.78
LIMS2-210ENST00000413578 PRR15LQ9BU68 103 aa3.93□□□□□ -1.78
LIMS2-210ENST00000413578 SMIM26A0A096LP01 95 aa3.92□□□□□ -1.78
LIMS2-210ENST00000413578 A8MU10 97 aa3.92□□□□□ -1.78
LIMS2-210ENST00000413578 AHNAKQ09666 5890 aaKnown RBP3.88□□□□□ -1.79
LIMS2-210ENST00000413578 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
LIMS2-210ENST00000413578 PSPHP1O15172 72 aa3.87□□□□□ -1.79
LIMS2-210ENST00000413578 MUC5BQ9HC84 5762 aaPredicted RBP3.87□□□□□ -1.79
LIMS2-210ENST00000413578 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
LIMS2-210ENST00000413578 Q1T7F1 81 aa3.83□□□□□ -1.8
LIMS2-210ENST00000413578 V9GYY9 64 aa3.83□□□□□ -1.8
LIMS2-210ENST00000413578 RPS28P62857 69 aaKnown RBP3.82□□□□□ -1.8
LIMS2-210ENST00000413578 MUC5ACP98088 5654 aa3.8□□□□□ -1.8
LIMS2-210ENST00000413578 UQCR11O14957 56 aa3.8□□□□□ -1.8
LIMS2-210ENST00000413578 KRTAP5-2Q701N4 177 aa3.79□□□□□ -1.8
LIMS2-210ENST00000413578 MIR22HGQ0VDD5 57 aa3.76□□□□□ -1.81
LIMS2-210ENST00000413578 A6NED7 52 aa3.74□□□□□ -1.81
LIMS2-210ENST00000413578 KRTAP5-8O75690 187 aa3.73□□□□□ -1.81
LIMS2-210ENST00000413578 KRTAP19-4Q3LI73 84 aa3.72□□□□□ -1.81
LIMS2-210ENST00000413578 MT1AP04731 61 aa3.66□□□□□ -1.82
LIMS2-210ENST00000413578 KRTAP6-1Q3LI64 71 aa3.66□□□□□ -1.82
LIMS2-210ENST00000413578 K7ERS5 55 aa3.63□□□□□ -1.83
LIMS2-210ENST00000413578 KRTAP25-1Q3LHN0 102 aa3.62□□□□□ -1.83
LIMS2-210ENST00000413578 LCE3CQ5T5A8 94 aa3.61□□□□□ -1.83
LIMS2-210ENST00000413578 KRTAP15-1Q3LI76 137 aa3.58□□□□□ -1.84
LIMS2-210ENST00000413578 CDC42SE1Q9NRR8 79 aa3.58□□□□□ -1.84
LIMS2-210ENST00000413578 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
LIMS2-210ENST00000413578 KRTAP9-4Q9BYQ2 154 aa3.55□□□□□ -1.84
LIMS2-210ENST00000413578 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
LIMS2-210ENST00000413578 KRTAP9-9Q9BYP9 154 aa3.54□□□□□ -1.84
LIMS2-210ENST00000413578 KRTAP23-1A1A580 65 aa3.5□□□□□ -1.85
LIMS2-210ENST00000413578 BRK1Q8WUW1 75 aa3.5□□□□□ -1.85
LIMS2-210ENST00000413578 KRTAP9-6A8MVA2 160 aa3.47□□□□□ -1.85
LIMS2-210ENST00000413578 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
LIMS2-210ENST00000413578 ROMO1P60602 79 aa3.44□□□□□ -1.86
LIMS2-210ENST00000413578 H3BS24 57 aa3.37□□□□□ -1.87
LIMS2-210ENST00000413578 MT3P25713 68 aa3.34□□□□□ -1.87
LIMS2-210ENST00000413578 PMAIP1Q13794 54 aa3.27□□□□□ -1.89
LIMS2-210ENST00000413578 PRO0628Q9UI54 55 aa3.21□□□□□ -1.9
LIMS2-210ENST00000413578 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
LIMS2-210ENST00000413578 PRAC1Q96KF2 57 aa3.15□□□□□ -1.91
LIMS2-210ENST00000413578 KRTAP4-2Q9BYR5 136 aa3.05□□□□□ -1.92
LIMS2-210ENST00000413578 KTN1-AS1Q86SY8 53 aa3.03□□□□□ -1.92
LIMS2-210ENST00000413578 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
LIMS2-210ENST00000413578 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
LIMS2-210ENST00000413578 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
LIMS2-210ENST00000413578 A0A0A0MQY5 61 aa2.78□□□□□ -1.96
LIMS2-210ENST00000413578 KRTAP5-11Q6L8G4 156 aa2.74□□□□□ -1.97
LIMS2-210ENST00000413578 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
LIMS2-210ENST00000413578 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
LIMS2-210ENST00000413578 PHGR1C9JFL3 82 aa2.55□□□□□ -2
LIMS2-210ENST00000413578 LUZP6Q538Z0 58 aa2.55□□□□□ -2
LIMS2-210ENST00000413578 LCE3DQ9BYE3 92 aa2.52□□□□□ -2.01
LIMS2-210ENST00000413578 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
LIMS2-210ENST00000413578 NDUFAF8A1L188 74 aa2.34□□□□□ -2.03
LIMS2-210ENST00000413578 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
LIMS2-210ENST00000413578 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
LIMS2-210ENST00000413578 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
LIMS2-210ENST00000413578 INE1O15225 51 aa1.95□□□□□ -2.1
LIMS2-210ENST00000413578 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
LIMS2-210ENST00000413578 PRM1P04553 51 aa1.8□□□□□ -2.12
LIMS2-210ENST00000413578 MUC16Q8WXI7 14507 aa1.64□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 1103.5 ms