RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 PRR15LQ9BU68 103 aa7.75□□□□□ -1.17
MSH6-202ENST00000411819 CCDC179H3BU77 68 aa7.66□□□□□ -1.18
MSH6-202ENST00000411819 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
MSH6-202ENST00000411819 KRTAP5-4Q6L8H1 288 aa7.64□□□□□ -1.19
MSH6-202ENST00000411819 AHNAK2Q8IVF2 5795 aa7.6□□□□□ -1.19
MSH6-202ENST00000411819 LINC01558Q9Y6Z2 57 aa7.59□□□□□ -1.19
MSH6-202ENST00000411819 KRTAP12-3P60328 96 aa7.57□□□□□ -1.2
MSH6-202ENST00000411819 KRTAP4-6Q9BYQ5 205 aa7.56□□□□□ -1.2
MSH6-202ENST00000411819 KRTAP4-7Q9BYR0 210 aa7.55□□□□□ -1.2
MSH6-202ENST00000411819 UQCR11O14957 56 aa7.47□□□□□ -1.21
MSH6-202ENST00000411819 KRTAP5-10Q6L8G5 202 aa7.41□□□□□ -1.22
MSH6-202ENST00000411819 TMEM258P61165 79 aa7.36□□□□□ -1.23
MSH6-202ENST00000411819 KRTAP25-1Q3LHN0 102 aa7.31□□□□□ -1.24
MSH6-202ENST00000411819 MIR22HGQ0VDD5 57 aa7.29□□□□□ -1.24
MSH6-202ENST00000411819 KRTAP5-5Q701N2 237 aaPredicted RBP7.27□□□□□ -1.25
MSH6-202ENST00000411819 KRTAP20-2Q3LI61 65 aa7.26□□□□□ -1.25
MSH6-202ENST00000411819 K7ERS5 55 aa7.22□□□□□ -1.25
MSH6-202ENST00000411819 KRTAP5-3Q6L8H2 238 aa7.22□□□□□ -1.25
MSH6-202ENST00000411819 SPRR5A0A1B0GTR4 108 aa7.18□□□□□ -1.26
MSH6-202ENST00000411819 KRTAP12-4P60329 112 aa7.17□□□□□ -1.26
MSH6-202ENST00000411819 LOC100996750A0A140TA64 210 aa7.16□□□□□ -1.26
MSH6-202ENST00000411819 KRTAP5-7Q6L8G8 165 aa7.14□□□□□ -1.27
MSH6-202ENST00000411819 PSPHP1O15172 72 aa7.06□□□□□ -1.28
MSH6-202ENST00000411819 KRTAP19-4Q3LI73 84 aa7.05□□□□□ -1.28
MSH6-202ENST00000411819 SYNE1Q8NF91 8797 aaKnown RBP7.03□□□□□ -1.28
MSH6-202ENST00000411819 V9GYY9 64 aa7.01□□□□□ -1.29
MSH6-202ENST00000411819 KRTAP15-1Q3LI76 137 aa7□□□□□ -1.29
MSH6-202ENST00000411819 KRTAP23-1A1A580 65 aa6.97□□□□□ -1.29
MSH6-202ENST00000411819 LCE3CQ5T5A8 94 aa6.94□□□□□ -1.3
MSH6-202ENST00000411819 Q1T7F1 81 aa6.92□□□□□ -1.3
MSH6-202ENST00000411819 A6NED7 52 aa6.82□□□□□ -1.32
MSH6-202ENST00000411819 CDC42SE1Q9NRR8 79 aa6.8□□□□□ -1.32
MSH6-202ENST00000411819 MT1AP04731 61 aa6.74□□□□□ -1.33
MSH6-202ENST00000411819 KRTAP6-1Q3LI64 71 aa6.72□□□□□ -1.33
MSH6-202ENST00000411819 ROMO1P60602 79 aa6.66□□□□□ -1.34
MSH6-202ENST00000411819 RPS28P62857 69 aaKnown RBP6.66□□□□□ -1.34
MSH6-202ENST00000411819 KRTAP5-2Q701N4 177 aa6.66□□□□□ -1.34
MSH6-202ENST00000411819 KRTAP4-11Q9BYQ6 195 aa6.66□□□□□ -1.34
MSH6-202ENST00000411819 KRTAP9-6A8MVA2 160 aa6.54□□□□□ -1.36
MSH6-202ENST00000411819 KRTAP9-4Q9BYQ2 154 aa6.51□□□□□ -1.37
MSH6-202ENST00000411819 KRTAP6-2Q3LI66 62 aa6.46□□□□□ -1.38
MSH6-202ENST00000411819 KRTAP5-8O75690 187 aa6.43□□□□□ -1.38
MSH6-202ENST00000411819 OBSCNQ5VST9 7968 aa6.35□□□□□ -1.39
MSH6-202ENST00000411819 AHNAKQ09666 5890 aaKnown RBP6.3□□□□□ -1.4
MSH6-202ENST00000411819 MUC5BQ9HC84 5762 aaPredicted RBP6.28□□□□□ -1.4
MSH6-202ENST00000411819 MUC5ACP98088 5654 aa6.27□□□□□ -1.41
MSH6-202ENST00000411819 MT3P25713 68 aa6.18□□□□□ -1.42
MSH6-202ENST00000411819 KRTAP9-9Q9BYP9 154 aa6.16□□□□□ -1.42
MSH6-202ENST00000411819 H3BS24 57 aa6.1□□□□□ -1.43
MSH6-202ENST00000411819 PCP4P48539 62 aa6.03□□□□□ -1.44
MSH6-202ENST00000411819 KRTAP5-1Q6L8H4 278 aa6.01□□□□□ -1.45
MSH6-202ENST00000411819 KRTAP4-12Q9BQ66 201 aa5.71□□□□□ -1.5
MSH6-202ENST00000411819 LCE1EQ5T753 118 aa5.68□□□□□ -1.5
MSH6-202ENST00000411819 BRK1Q8WUW1 75 aa5.6□□□□□ -1.51
MSH6-202ENST00000411819 LCE1BQ5T7P3 118 aa5.44□□□□□ -1.54
MSH6-202ENST00000411819 KRTAP4-2Q9BYR5 136 aa5.41□□□□□ -1.54
MSH6-202ENST00000411819 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
MSH6-202ENST00000411819 LCE1CQ5T751 118 aa5.28□□□□□ -1.56
MSH6-202ENST00000411819 PMAIP1Q13794 54 aa5.21□□□□□ -1.58
MSH6-202ENST00000411819 PRAC1Q96KF2 57 aa5.13□□□□□ -1.59
MSH6-202ENST00000411819 LCE3DQ9BYE3 92 aa4.97□□□□□ -1.61
MSH6-202ENST00000411819 KRTAP5-11Q6L8G4 156 aa4.81□□□□□ -1.64
MSH6-202ENST00000411819 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.76□□□□□ -1.65
MSH6-202ENST00000411819 LCE1FQ5T754 118 aa4.7□□□□□ -1.66
MSH6-202ENST00000411819 LCE3EQ5T5B0 92 aa4.65□□□□□ -1.67
MSH6-202ENST00000411819 PRO0628Q9UI54 55 aa4.55□□□□□ -1.68
MSH6-202ENST00000411819 KTN1-AS1Q86SY8 53 aa4.46□□□□□ -1.7
MSH6-202ENST00000411819 KRTAP21-2Q3LI59 83 aa4.4□□□□□ -1.71
MSH6-202ENST00000411819 PHGR1C9JFL3 82 aa4.37□□□□□ -1.71
MSH6-202ENST00000411819 LUZP6Q538Z0 58 aa4.37□□□□□ -1.71
MSH6-202ENST00000411819 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
MSH6-202ENST00000411819 KRTAP4-4Q9BYR3 166 aa4.12□□□□□ -1.75
MSH6-202ENST00000411819 MUC19Q7Z5P9 8384 aa3.92□□□□□ -1.78
MSH6-202ENST00000411819 PRM1P04553 51 aa3.4□□□□□ -1.87
MSH6-202ENST00000411819 KRTAP21-1Q3LI58 79 aa3.3□□□□□ -1.88
MSH6-202ENST00000411819 NDUFAF8A1L188 74 aa3.21□□□□□ -1.9
MSH6-202ENST00000411819 MUC16Q8WXI7 14507 aa2.76□□□□□ -1.97
MSH6-202ENST00000411819 INE1O15225 51 aa2.46□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 84 ms