RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SYNE2Q8WXH0 6885 aaKnown RBP5.43□□□□□ -1.54
LIMS1-205ENST00000410093 LCE3AQ5TA76 89 aa5.42□□□□□ -1.54
LIMS1-205ENST00000410093 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
LIMS1-205ENST00000410093 KRTAP10-12P60413 245 aa5.38□□□□□ -1.55
LIMS1-205ENST00000410093 LUZP6Q538Z0 58 aa5.36□□□□□ -1.55
LIMS1-205ENST00000410093 NDUFAF8A1L188 74 aa5.34□□□□□ -1.55
LIMS1-205ENST00000410093 SPRR5A0A1B0GTR4 108 aa5.32□□□□□ -1.56
LIMS1-205ENST00000410093 KRTAP6-3Q3LI67 103 aa5.28□□□□□ -1.56
LIMS1-205ENST00000410093 KRTAP10-7P60409 375 aaPredicted RBP5.27□□□□□ -1.57
LIMS1-205ENST00000410093 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
LIMS1-205ENST00000410093 A0A0A0MQY5 61 aa5.23□□□□□ -1.57
LIMS1-205ENST00000410093 KRTAP19-4Q3LI73 84 aa5.17□□□□□ -1.58
LIMS1-205ENST00000410093 NEBP20929 6669 aa5.09□□□□□ -1.59
LIMS1-205ENST00000410093 MUC12Q9UKN1 5478 aa5.06□□□□□ -1.6
LIMS1-205ENST00000410093 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
LIMS1-205ENST00000410093 KRTAP5-9P26371 169 aa5.01□□□□□ -1.61
LIMS1-205ENST00000410093 LCE3CQ5T5A8 94 aa4.93□□□□□ -1.62
LIMS1-205ENST00000410093 KMT2DO14686 5537 aa4.93□□□□□ -1.62
LIMS1-205ENST00000410093 SPRR2FQ96RM1 72 aa4.92□□□□□ -1.62
LIMS1-205ENST00000410093 KRTAP20-1Q3LI63 56 aa4.92□□□□□ -1.62
LIMS1-205ENST00000410093 MDN1Q9NU22 5596 aa4.92□□□□□ -1.62
LIMS1-205ENST00000410093 KRTAP19-7Q3SYF9 63 aa4.91□□□□□ -1.62
LIMS1-205ENST00000410093 SPRR2EP22531 72 aa4.86□□□□□ -1.63
LIMS1-205ENST00000410093 SPRR2BP35325 72 aa4.86□□□□□ -1.63
LIMS1-205ENST00000410093 SPRR2AP35326 72 aa4.86□□□□□ -1.63
LIMS1-205ENST00000410093 MT1EP04732 61 aa4.82□□□□□ -1.64
LIMS1-205ENST00000410093 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.81□□□□□ -1.64
LIMS1-205ENST00000410093 KRTAP2-3P0C7H8 128 aa4.78□□□□□ -1.64
LIMS1-205ENST00000410093 KRTAP2-4Q9BYR9 128 aa4.78□□□□□ -1.64
LIMS1-205ENST00000410093 MT1LQ93083 61 aa4.77□□□□□ -1.65
LIMS1-205ENST00000410093 LCE1AQ5T7P2 110 aa4.73□□□□□ -1.65
LIMS1-205ENST00000410093 SPRR2DP22532 72 aa4.7□□□□□ -1.66
LIMS1-205ENST00000410093 KRTAP2-2Q9BYT5 123 aa4.64□□□□□ -1.67
LIMS1-205ENST00000410093 KRTAP2-1Q9BYU5 128 aa4.64□□□□□ -1.67
LIMS1-205ENST00000410093 MT1GP13640 62 aa4.62□□□□□ -1.67
LIMS1-205ENST00000410093 KRTAP19-3Q7Z4W3 81 aa4.6□□□□□ -1.67
LIMS1-205ENST00000410093 KRTAP9-6A8MVA2 160 aa4.57□□□□□ -1.68
LIMS1-205ENST00000410093 INE1O15225 51 aa4.56□□□□□ -1.68
LIMS1-205ENST00000410093 MT1MQ8N339 61 aa4.51□□□□□ -1.69
LIMS1-205ENST00000410093 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.71
LIMS1-205ENST00000410093 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
LIMS1-205ENST00000410093 KRTAP4-3Q9BYR4 195 aa4.33□□□□□ -1.72
LIMS1-205ENST00000410093 GPR98Q8WXG9 6306 aa4.11□□□□□ -1.75
LIMS1-205ENST00000410093 KRTAP5-1Q6L8H4 278 aa4.11□□□□□ -1.75
LIMS1-205ENST00000410093 MT4P47944 62 aa4.1□□□□□ -1.75
LIMS1-205ENST00000410093 MT1AP04731 61 aa4.09□□□□□ -1.75
LIMS1-205ENST00000410093 KRTAP5-4Q6L8H1 288 aa4.07□□□□□ -1.76
LIMS1-205ENST00000410093 KRTAP5-5Q701N2 237 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-205ENST00000410093 KRTAP4-4Q9BYR3 166 aa4.03□□□□□ -1.76
LIMS1-205ENST00000410093 HMCN1Q96RW7 5635 aa4.02□□□□□ -1.77
LIMS1-205ENST00000410093 KRTAP6-1Q3LI64 71 aa3.98□□□□□ -1.77
LIMS1-205ENST00000410093 AHNAK2Q8IVF2 5795 aa3.88□□□□□ -1.79
LIMS1-205ENST00000410093 KRTAP12-4P60329 112 aa3.85□□□□□ -1.79
LIMS1-205ENST00000410093 KRTAP20-2Q3LI61 65 aa3.8□□□□□ -1.8
LIMS1-205ENST00000410093 KRTAP5-10Q6L8G5 202 aa3.79□□□□□ -1.8
LIMS1-205ENST00000410093 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
LIMS1-205ENST00000410093 SYNE1Q8NF91 8797 aaKnown RBP3.77□□□□□ -1.81
LIMS1-205ENST00000410093 LCE1EQ5T753 118 aa3.73□□□□□ -1.81
LIMS1-205ENST00000410093 MT3P25713 68 aa3.71□□□□□ -1.82
LIMS1-205ENST00000410093 LCE3EQ5T5B0 92 aa3.71□□□□□ -1.82
LIMS1-205ENST00000410093 KRTAP5-7Q6L8G8 165 aa3.65□□□□□ -1.82
LIMS1-205ENST00000410093 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
LIMS1-205ENST00000410093 KRTAP5-2Q701N4 177 aa3.54□□□□□ -1.84
LIMS1-205ENST00000410093 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
LIMS1-205ENST00000410093 KRTAP5-8O75690 187 aa3.34□□□□□ -1.88
LIMS1-205ENST00000410093 PRM1P04553 51 aa3.33□□□□□ -1.88
LIMS1-205ENST00000410093 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
LIMS1-205ENST00000410093 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
LIMS1-205ENST00000410093 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
LIMS1-205ENST00000410093 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
LIMS1-205ENST00000410093 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
LIMS1-205ENST00000410093 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
LIMS1-205ENST00000410093 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
LIMS1-205ENST00000410093 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
LIMS1-205ENST00000410093 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
LIMS1-205ENST00000410093 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
LIMS1-205ENST00000410093 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 82 ms