RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MT1EP04732 61 aa4.61□□□□□ -1.67
VPS54-203ENST00000409558 MT1LQ93083 61 aa4.61□□□□□ -1.67
VPS54-203ENST00000409558 MT1GP13640 62 aa4.56□□□□□ -1.68
VPS54-203ENST00000409558 MACF1Q9UPN3 7388 aaKnown RBP4.55□□□□□ -1.68
VPS54-203ENST00000409558 SYNE2Q8WXH0 6885 aaKnown RBP4.55□□□□□ -1.68
VPS54-203ENST00000409558 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
VPS54-203ENST00000409558 KRTAP19-6Q3LI70 58 aa4.49□□□□□ -1.69
VPS54-203ENST00000409558 LCE2DQ5TA82 110 aaPredicted RBP4.46□□□□□ -1.7
VPS54-203ENST00000409558 MDN1Q9NU22 5596 aa4.43□□□□□ -1.7
VPS54-203ENST00000409558 INE1O15225 51 aa4.43□□□□□ -1.7
VPS54-203ENST00000409558 KRTAP19-4Q3LI73 84 aa4.35□□□□□ -1.71
VPS54-203ENST00000409558 MT1MQ8N339 61 aa4.34□□□□□ -1.71
VPS54-203ENST00000409558 KRTAP19-3Q7Z4W3 81 aa4.34□□□□□ -1.71
VPS54-203ENST00000409558 KRTAP2-3P0C7H8 128 aa4.28□□□□□ -1.72
VPS54-203ENST00000409558 KRTAP2-4Q9BYR9 128 aa4.28□□□□□ -1.72
VPS54-203ENST00000409558 KRTAP2-1Q9BYU5 128 aa4.28□□□□□ -1.72
VPS54-203ENST00000409558 LCE3BQ5TA77 95 aa4.26□□□□□ -1.73
VPS54-203ENST00000409558 KRTAP4-9Q9BYQ8 210 aa4.23□□□□□ -1.73
VPS54-203ENST00000409558 KRTAP9-2Q9BYQ4 174 aa4.17□□□□□ -1.74
VPS54-203ENST00000409558 LCE5AQ5TCM9 118 aa4.12□□□□□ -1.75
VPS54-203ENST00000409558 KRTAP12-4P60329 112 aa4.1□□□□□ -1.75
VPS54-203ENST00000409558 SPRR2EP22531 72 aa4.06□□□□□ -1.76
VPS54-203ENST00000409558 SPRR2BP35325 72 aa4.06□□□□□ -1.76
VPS54-203ENST00000409558 SPRR2AP35326 72 aa4.06□□□□□ -1.76
VPS54-203ENST00000409558 KRTAP6-1Q3LI64 71 aa4.02□□□□□ -1.77
VPS54-203ENST00000409558 LCE1AQ5T7P2 110 aa3.97□□□□□ -1.77
VPS54-203ENST00000409558 SPRR2DP22532 72 aa3.86□□□□□ -1.79
VPS54-203ENST00000409558 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
VPS54-203ENST00000409558 MT1AP04731 61 aa3.79□□□□□ -1.8
VPS54-203ENST00000409558 KRTAP5-9P26371 169 aa3.79□□□□□ -1.8
VPS54-203ENST00000409558 KRTAP9-7A8MTY7 169 aa3.73□□□□□ -1.81
VPS54-203ENST00000409558 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
VPS54-203ENST00000409558 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.7□□□□□ -1.82
VPS54-203ENST00000409558 KRTAP9-6A0A140TA67 174 aa3.69□□□□□ -1.82
VPS54-203ENST00000409558 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
VPS54-203ENST00000409558 KRTAP6-2Q3LI66 62 aa3.67□□□□□ -1.82
VPS54-203ENST00000409558 PRM1P04553 51 aa3.63□□□□□ -1.83
VPS54-203ENST00000409558 KRTAP5-5Q701N2 237 aaPredicted RBP3.63□□□□□ -1.83
VPS54-203ENST00000409558 MT4P47944 62 aa3.61□□□□□ -1.83
VPS54-203ENST00000409558 KRTAP9-4Q9BYQ2 154 aa3.59□□□□□ -1.84
VPS54-203ENST00000409558 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
VPS54-203ENST00000409558 MT3P25713 68 aa3.48□□□□□ -1.85
VPS54-203ENST00000409558 NEBP20929 6669 aa3.43□□□□□ -1.86
VPS54-203ENST00000409558 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
VPS54-203ENST00000409558 LCE1DQ5T752 114 aa3.25□□□□□ -1.89
VPS54-203ENST00000409558 LCE4AQ5TA78 99 aa3.22□□□□□ -1.89
VPS54-203ENST00000409558 KRTAP5-4Q6L8H1 288 aa3.2□□□□□ -1.9
VPS54-203ENST00000409558 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
VPS54-203ENST00000409558 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
VPS54-203ENST00000409558 KRTAP2-2Q9BYT5 123 aa3.17□□□□□ -1.9
VPS54-203ENST00000409558 KRTAP20-1Q3LI63 56 aa3.12□□□□□ -1.91
VPS54-203ENST00000409558 MUC5ACP98088 5654 aa3.08□□□□□ -1.92
VPS54-203ENST00000409558 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
VPS54-203ENST00000409558 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
VPS54-203ENST00000409558 KRTAP5-3Q6L8H2 238 aa2.91□□□□□ -1.94
VPS54-203ENST00000409558 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
VPS54-203ENST00000409558 LCE1EQ5T753 118 aa2.73□□□□□ -1.97
VPS54-203ENST00000409558 MUC5BQ9HC84 5762 aaPredicted RBP2.71□□□□□ -1.98
VPS54-203ENST00000409558 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
VPS54-203ENST00000409558 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
VPS54-203ENST00000409558 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
VPS54-203ENST00000409558 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
VPS54-203ENST00000409558 KRTAP5-1Q6L8H4 278 aa2.62□□□□□ -1.99
VPS54-203ENST00000409558 KRTAP4-12Q9BQ66 201 aa2.59□□□□□ -2
VPS54-203ENST00000409558 LCE1CQ5T751 118 aa2.54□□□□□ -2
VPS54-203ENST00000409558 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
VPS54-203ENST00000409558 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.01
VPS54-203ENST00000409558 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
VPS54-203ENST00000409558 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.32□□□□□ -2.04
VPS54-203ENST00000409558 KRTAP9-9Q9BYP9 154 aa2.32□□□□□ -2.04
VPS54-203ENST00000409558 KRTAP5-7Q6L8G8 165 aa2.32□□□□□ -2.04
VPS54-203ENST00000409558 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
VPS54-203ENST00000409558 KRTAP5-11Q6L8G4 156 aa2.21□□□□□ -2.06
VPS54-203ENST00000409558 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
VPS54-203ENST00000409558 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
VPS54-203ENST00000409558 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
VPS54-203ENST00000409558 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 53.3 ms