RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 KRTAP4-9Q9BYQ8 210 aa2.27□□□□□ -2.05
LIG3-202ENST00000378526 KRTAP9-2Q9BYQ4 174 aa2.25□□□□□ -2.05
LIG3-202ENST00000378526 LCE4AQ5TA78 99 aa2.24□□□□□ -2.05
LIG3-202ENST00000378526 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
LIG3-202ENST00000378526 LCE1EQ5T753 118 aa2.24□□□□□ -2.05
LIG3-202ENST00000378526 LCE1FQ5T754 118 aa2.24□□□□□ -2.05
LIG3-202ENST00000378526 LCE1AQ5T7P2 110 aa2.24□□□□□ -2.05
LIG3-202ENST00000378526 HERC1Q15751 4861 aa2.23□□□□□ -2.05
LIG3-202ENST00000378526 KRTAP9-7A8MTY7 169 aa2.22□□□□□ -2.05
LIG3-202ENST00000378526 KRTAP4-3Q9BYR4 195 aa2.19□□□□□ -2.06
LIG3-202ENST00000378526 KRTAP9-4Q9BYQ2 154 aa2.18□□□□□ -2.06
LIG3-202ENST00000378526 PCLOQ9Y6V0 5065 aa2.18□□□□□ -2.06
LIG3-202ENST00000378526 KMT2CQ8NEZ4 4911 aaKnown RBP2.15□□□□□ -2.06
LIG3-202ENST00000378526 MUC17Q685J3 4493 aa2.15□□□□□ -2.06
LIG3-202ENST00000378526 KRTAP19-6Q3LI70 58 aa2.15□□□□□ -2.07
LIG3-202ENST00000378526 KRTAP19-7Q3SYF9 63 aa2.14□□□□□ -2.07
LIG3-202ENST00000378526 KRTAP19-2Q3LHN2 52 aa2.14□□□□□ -2.07
LIG3-202ENST00000378526 KIAA1109Q2LD37 5005 aa2.14□□□□□ -2.07
LIG3-202ENST00000378526 HYDINQ4G0P3 5121 aa2.14□□□□□ -2.07
LIG3-202ENST00000378526 KRTAP9-6A0A140TA67 174 aa2.12□□□□□ -2.07
LIG3-202ENST00000378526 SYNE2Q8WXH0 6885 aaKnown RBP2.11□□□□□ -2.07
LIG3-202ENST00000378526 KRTAP6-1Q3LI64 71 aa2.11□□□□□ -2.07
LIG3-202ENST00000378526 HERC2O95714 4834 aa2.1□□□□□ -2.07
LIG3-202ENST00000378526 KRTAP20-1Q3LI63 56 aa2.08□□□□□ -2.08
LIG3-202ENST00000378526 RYR2Q92736 4967 aa2.07□□□□□ -2.08
LIG3-202ENST00000378526 SYNE1Q8NF91 8797 aaKnown RBP2.05□□□□□ -2.08
LIG3-202ENST00000378526 KRTAP9-6A8MVA2 160 aa2.04□□□□□ -2.08
LIG3-202ENST00000378526 FSIP2Q5CZC0 6907 aa2.03□□□□□ -2.09
LIG3-202ENST00000378526 KRTAP4-11Q9BYQ6 195 aa2.02□□□□□ -2.09
LIG3-202ENST00000378526 BIRC6Q9NR09 4857 aa1.99□□□□□ -2.09
LIG3-202ENST00000378526 KRTAP6-3Q3LI67 103 aa1.96□□□□□ -2.1
LIG3-202ENST00000378526 HMCN2Q8NDA2 5059 aa1.94□□□□□ -2.1
LIG3-202ENST00000378526 KRTAP9-9Q9BYP9 154 aa1.91□□□□□ -2.1
LIG3-202ENST00000378526 EPPK1P58107 5090 aaKnown RBP1.91□□□□□ -2.1
LIG3-202ENST00000378526 MUC2Q02817 5179 aa1.89□□□□□ -2.11
LIG3-202ENST00000378526 UBR4Q5T4S7 5183 aa1.88□□□□□ -2.11
LIG3-202ENST00000378526 ABCA13Q86UQ4 5058 aa1.84□□□□□ -2.12
LIG3-202ENST00000378526 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.82□□□□□ -2.12
LIG3-202ENST00000378526 KRTAP20-2Q3LI61 65 aa1.8□□□□□ -2.12
LIG3-202ENST00000378526 RNF213Q63HN8 5207 aa1.79□□□□□ -2.12
LIG3-202ENST00000378526 FAT4Q6V0I7 4981 aa1.77□□□□□ -2.13
LIG3-202ENST00000378526 DSTQ03001 7570 aaKnown RBP1.77□□□□□ -2.13
LIG3-202ENST00000378526 KMT2DO14686 5537 aa1.73□□□□□ -2.13
LIG3-202ENST00000378526 FCGBPQ9Y6R7 5405 aaPredicted RBP1.7□□□□□ -2.14
LIG3-202ENST00000378526 OBSCNQ5VST9 7968 aa1.7□□□□□ -2.14
LIG3-202ENST00000378526 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
LIG3-202ENST00000378526 KRTAP4-4Q9BYR3 166 aa1.61□□□□□ -2.15
LIG3-202ENST00000378526 MACF1Q9UPN3 7388 aaKnown RBP1.61□□□□□ -2.15
LIG3-202ENST00000378526 KRTAP4-12Q9BQ66 201 aa1.57□□□□□ -2.16
LIG3-202ENST00000378526 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
LIG3-202ENST00000378526 USH2AO75445 5202 aa1.53□□□□□ -2.16
LIG3-202ENST00000378526 KRTAP4-6Q9BYQ5 205 aa1.52□□□□□ -2.17
LIG3-202ENST00000378526 NEBP20929 6669 aa1.51□□□□□ -2.17
LIG3-202ENST00000378526 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
LIG3-202ENST00000378526 MDN1Q9NU22 5596 aa1.47□□□□□ -2.17
LIG3-202ENST00000378526 KRTAP4-2Q9BYR5 136 aa1.45□□□□□ -2.18
LIG3-202ENST00000378526 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
LIG3-202ENST00000378526 KRTAP5-4Q6L8H1 288 aa1.43□□□□□ -2.18
LIG3-202ENST00000378526 GPR98Q8WXG9 6306 aa1.39□□□□□ -2.19
LIG3-202ENST00000378526 SSPOA2VEC9 5147 aa1.38□□□□□ -2.19
LIG3-202ENST00000378526 KRTAP5-10Q6L8G5 202 aa1.3□□□□□ -2.2
LIG3-202ENST00000378526 KRTAP5-2Q701N4 177 aa1.25□□□□□ -2.21
LIG3-202ENST00000378526 MUC5ACP98088 5654 aa1.25□□□□□ -2.21
LIG3-202ENST00000378526 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
LIG3-202ENST00000378526 KRTAP5-3Q6L8H2 238 aa1.22□□□□□ -2.21
LIG3-202ENST00000378526 AHNAK2Q8IVF2 5795 aa1.21□□□□□ -2.22
LIG3-202ENST00000378526 HMCN1Q96RW7 5635 aa1.17□□□□□ -2.22
LIG3-202ENST00000378526 AHNAKQ09666 5890 aaKnown RBP1.14□□□□□ -2.23
LIG3-202ENST00000378526 MUC5BQ9HC84 5762 aaPredicted RBP1.13□□□□□ -2.23
LIG3-202ENST00000378526 PHGR1C9JFL3 82 aa1.12□□□□□ -2.23
LIG3-202ENST00000378526 KRTAP5-8O75690 187 aa1.09□□□□□ -2.23
LIG3-202ENST00000378526 KRTAP5-11Q6L8G4 156 aa1.06□□□□□ -2.24
LIG3-202ENST00000378526 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.05□□□□□ -2.24
LIG3-202ENST00000378526 KRTAP5-1Q6L8H4 278 aa1.05□□□□□ -2.24
LIG3-202ENST00000378526 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
LIG3-202ENST00000378526 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
LIG3-202ENST00000378526 KRTAP5-7Q6L8G8 165 aa0.91□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 138 ms