RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LCE1EQ5T753 118 aa3.15□□□□□ -1.91
VPS13A-205ENST00000376636 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
VPS13A-205ENST00000376636 RYR1P21817 5038 aa3.13□□□□□ -1.91
VPS13A-205ENST00000376636 KRTAP4-9Q9BYQ8 210 aa3.13□□□□□ -1.91
VPS13A-205ENST00000376636 LCE4AQ5TA78 99 aa3.12□□□□□ -1.91
VPS13A-205ENST00000376636 LRP2P98164 4655 aa3.12□□□□□ -1.91
VPS13A-205ENST00000376636 DNHD1Q96M86 4753 aa3.1□□□□□ -1.91
VPS13A-205ENST00000376636 KRTAP9-6A0A140TA67 174 aa3.08□□□□□ -1.92
VPS13A-205ENST00000376636 MUC17Q685J3 4493 aa3.03□□□□□ -1.92
VPS13A-205ENST00000376636 KRTAP19-7Q3SYF9 63 aa3.02□□□□□ -1.93
VPS13A-205ENST00000376636 KRTAP17-1Q9BYP8 105 aa3.02□□□□□ -1.93
VPS13A-205ENST00000376636 RYR3Q15413 4870 aa3.01□□□□□ -1.93
VPS13A-205ENST00000376636 SYNE1Q8NF91 8797 aaKnown RBP3□□□□□ -1.93
VPS13A-205ENST00000376636 KRTAP9-4Q9BYQ2 154 aa2.99□□□□□ -1.93
VPS13A-205ENST00000376636 KRTAP9-7A8MTY7 169 aa2.99□□□□□ -1.93
VPS13A-205ENST00000376636 KRTAP6-3Q3LI67 103 aa2.97□□□□□ -1.93
VPS13A-205ENST00000376636 KRTAP19-2Q3LHN2 52 aa2.96□□□□□ -1.94
VPS13A-205ENST00000376636 KRTAP6-1Q3LI64 71 aa2.95□□□□□ -1.94
VPS13A-205ENST00000376636 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
VPS13A-205ENST00000376636 LCE2AQ5TA79 106 aaPredicted RBP2.88□□□□□ -1.95
VPS13A-205ENST00000376636 KMT2CQ8NEZ4 4911 aaKnown RBP2.87□□□□□ -1.95
VPS13A-205ENST00000376636 KRTAP9-9Q9BYP9 154 aa2.84□□□□□ -1.96
VPS13A-205ENST00000376636 PCLOQ9Y6V0 5065 aa2.81□□□□□ -1.96
VPS13A-205ENST00000376636 HERC2O95714 4834 aa2.79□□□□□ -1.96
VPS13A-205ENST00000376636 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
VPS13A-205ENST00000376636 FSIP2Q5CZC0 6907 aa2.75□□□□□ -1.97
VPS13A-205ENST00000376636 HMCN2Q8NDA2 5059 aa2.74□□□□□ -1.97
VPS13A-205ENST00000376636 OBSCNQ5VST9 7968 aa2.73□□□□□ -1.97
VPS13A-205ENST00000376636 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-205ENST00000376636 BIRC6Q9NR09 4857 aa2.67□□□□□ -1.98
VPS13A-205ENST00000376636 RYR2Q92736 4967 aa2.65□□□□□ -1.99
VPS13A-205ENST00000376636 KRTAP4-11Q9BYQ6 195 aa2.63□□□□□ -1.99
VPS13A-205ENST00000376636 HERC1Q15751 4861 aa2.61□□□□□ -1.99
VPS13A-205ENST00000376636 HYDINQ4G0P3 5121 aa2.56□□□□□ -2
VPS13A-205ENST00000376636 DSTQ03001 7570 aaKnown RBP2.55□□□□□ -2
VPS13A-205ENST00000376636 KRTAP20-2Q3LI61 65 aa2.5□□□□□ -2.01
VPS13A-205ENST00000376636 MACF1Q9UPN3 7388 aaKnown RBP2.48□□□□□ -2.01
VPS13A-205ENST00000376636 KIAA1109Q2LD37 5005 aa2.43□□□□□ -2.02
VPS13A-205ENST00000376636 EPPK1P58107 5090 aaKnown RBP2.4□□□□□ -2.02
VPS13A-205ENST00000376636 MUC2Q02817 5179 aa2.38□□□□□ -2.03
VPS13A-205ENST00000376636 KRTAP5-9P26371 169 aa2.38□□□□□ -2.03
VPS13A-205ENST00000376636 KRTAP4-4Q9BYR3 166 aa2.31□□□□□ -2.04
VPS13A-205ENST00000376636 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
VPS13A-205ENST00000376636 FAT4Q6V0I7 4981 aa2.29□□□□□ -2.04
VPS13A-205ENST00000376636 KRTAP4-6Q9BYQ5 205 aa2.26□□□□□ -2.05
VPS13A-205ENST00000376636 RNF213Q63HN8 5207 aa2.21□□□□□ -2.06
VPS13A-205ENST00000376636 UBR4Q5T4S7 5183 aa2.21□□□□□ -2.06
VPS13A-205ENST00000376636 KRTAP5-4Q6L8H1 288 aa2.19□□□□□ -2.06
VPS13A-205ENST00000376636 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
VPS13A-205ENST00000376636 KRTAP4-2Q9BYR5 136 aa2.19□□□□□ -2.06
VPS13A-205ENST00000376636 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-205ENST00000376636 KRTAP5-5Q701N2 237 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-205ENST00000376636 NEBP20929 6669 aa2.09□□□□□ -2.07
VPS13A-205ENST00000376636 ABCA13Q86UQ4 5058 aa2.09□□□□□ -2.08
VPS13A-205ENST00000376636 KMT2DO14686 5537 aa2.08□□□□□ -2.08
VPS13A-205ENST00000376636 MDN1Q9NU22 5596 aa1.93□□□□□ -2.1
VPS13A-205ENST00000376636 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
VPS13A-205ENST00000376636 SSPOA2VEC9 5147 aa1.85□□□□□ -2.11
VPS13A-205ENST00000376636 USH2AO75445 5202 aa1.84□□□□□ -2.11
VPS13A-205ENST00000376636 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
VPS13A-205ENST00000376636 MUC5ACP98088 5654 aa1.76□□□□□ -2.13
VPS13A-205ENST00000376636 KRTAP5-10Q6L8G5 202 aa1.73□□□□□ -2.13
VPS13A-205ENST00000376636 MUC12Q9UKN1 5478 aa1.65□□□□□ -2.14
VPS13A-205ENST00000376636 KRTAP5-8O75690 187 aa1.65□□□□□ -2.15
VPS13A-205ENST00000376636 GPR98Q8WXG9 6306 aa1.62□□□□□ -2.15
VPS13A-205ENST00000376636 MUC5BQ9HC84 5762 aaPredicted RBP1.62□□□□□ -2.15
VPS13A-205ENST00000376636 KRTAP5-2Q701N4 177 aa1.6□□□□□ -2.15
VPS13A-205ENST00000376636 KRTAP5-11Q6L8G4 156 aa1.58□□□□□ -2.16
VPS13A-205ENST00000376636 HMCN1Q96RW7 5635 aa1.57□□□□□ -2.16
VPS13A-205ENST00000376636 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
VPS13A-205ENST00000376636 KRTAP5-1Q6L8H4 278 aa1.48□□□□□ -2.17
VPS13A-205ENST00000376636 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
VPS13A-205ENST00000376636 KRTAP21-2Q3LI59 83 aa1.35□□□□□ -2.19
VPS13A-205ENST00000376636 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
VPS13A-205ENST00000376636 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-205ENST00000376636 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
VPS13A-205ENST00000376636 KRTAP5-7Q6L8G8 165 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms