RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 HYDINQ4G0P3 5121 aa2.93□□□□□ -1.94
PTCH1-204ENST00000375290 LCE1AQ5T7P2 110 aa2.9□□□□□ -1.95
PTCH1-204ENST00000375290 KRTAP4-7Q9BYR0 210 aa2.89□□□□□ -1.95
PTCH1-204ENST00000375290 LCE2DQ5TA82 110 aaPredicted RBP2.83□□□□□ -1.96
PTCH1-204ENST00000375290 BIRC6Q9NR09 4857 aa2.83□□□□□ -1.96
PTCH1-204ENST00000375290 LPAP08519 4548 aa2.82□□□□□ -1.96
PTCH1-204ENST00000375290 LCE2AQ5TA79 106 aaPredicted RBP2.76□□□□□ -1.97
PTCH1-204ENST00000375290 LCE5AQ5TCM9 118 aa2.76□□□□□ -1.97
PTCH1-204ENST00000375290 LOC100996750A0A140TA64 210 aa2.73□□□□□ -1.97
PTCH1-204ENST00000375290 HMCN2Q8NDA2 5059 aa2.73□□□□□ -1.97
PTCH1-204ENST00000375290 KRTAP9-4Q9BYQ2 154 aa2.72□□□□□ -1.97
PTCH1-204ENST00000375290 RNF213Q63HN8 5207 aa2.72□□□□□ -1.97
PTCH1-204ENST00000375290 KRTAP9-6A8MVA2 160 aa2.72□□□□□ -1.97
PTCH1-204ENST00000375290 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
PTCH1-204ENST00000375290 EPPK1P58107 5090 aaKnown RBP2.69□□□□□ -1.98
PTCH1-204ENST00000375290 SYNE1Q8NF91 8797 aaKnown RBP2.66□□□□□ -1.98
PTCH1-204ENST00000375290 LCE4AQ5TA78 99 aa2.66□□□□□ -1.98
PTCH1-204ENST00000375290 LCE1DQ5T752 114 aa2.64□□□□□ -1.99
PTCH1-204ENST00000375290 KRTAP4-3Q9BYR4 195 aa2.62□□□□□ -1.99
PTCH1-204ENST00000375290 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
PTCH1-204ENST00000375290 KRTAP9-2Q9BYQ4 174 aa2.61□□□□□ -1.99
PTCH1-204ENST00000375290 KRTAP6-1Q3LI64 71 aa2.61□□□□□ -1.99
PTCH1-204ENST00000375290 FAT4Q6V0I7 4981 aa2.6□□□□□ -1.99
PTCH1-204ENST00000375290 UBR4Q5T4S7 5183 aa2.6□□□□□ -1.99
PTCH1-204ENST00000375290 KRTAP4-9Q9BYQ8 210 aa2.59□□□□□ -1.99
PTCH1-204ENST00000375290 ABCA13Q86UQ4 5058 aa2.58□□□□□ -2
PTCH1-204ENST00000375290 MT4P47944 62 aa2.56□□□□□ -2
PTCH1-204ENST00000375290 KRTAP2-2Q9BYT5 123 aa2.56□□□□□ -2
PTCH1-204ENST00000375290 KRTAP6-3Q3LI67 103 aa2.55□□□□□ -2
PTCH1-204ENST00000375290 SYNE2Q8WXH0 6885 aaKnown RBP2.52□□□□□ -2.01
PTCH1-204ENST00000375290 KRTAP9-7A8MTY7 169 aa2.48□□□□□ -2.01
PTCH1-204ENST00000375290 KRTAP9-6A0A140TA67 174 aa2.44□□□□□ -2.02
PTCH1-204ENST00000375290 MUC2Q02817 5179 aa2.37□□□□□ -2.03
PTCH1-204ENST00000375290 KRTAP5-9P26371 169 aa2.36□□□□□ -2.03
PTCH1-204ENST00000375290 KRTAP20-1Q3LI63 56 aa2.33□□□□□ -2.04
PTCH1-204ENST00000375290 OBSCNQ5VST9 7968 aa2.3□□□□□ -2.04
PTCH1-204ENST00000375290 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
PTCH1-204ENST00000375290 LCE1EQ5T753 118 aa2.28□□□□□ -2.04
PTCH1-204ENST00000375290 LCE1FQ5T754 118 aa2.28□□□□□ -2.04
PTCH1-204ENST00000375290 FSIP2Q5CZC0 6907 aa2.28□□□□□ -2.04
PTCH1-204ENST00000375290 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.18□□□□□ -2.06
PTCH1-204ENST00000375290 USH2AO75445 5202 aa2.17□□□□□ -2.06
PTCH1-204ENST00000375290 FCGBPQ9Y6R7 5405 aaPredicted RBP2.16□□□□□ -2.06
PTCH1-204ENST00000375290 MDN1Q9NU22 5596 aa2.16□□□□□ -2.06
PTCH1-204ENST00000375290 NEBP20929 6669 aa2.15□□□□□ -2.06
PTCH1-204ENST00000375290 KRTAP5-5Q701N2 237 aaPredicted RBP2.13□□□□□ -2.07
PTCH1-204ENST00000375290 KRTAP9-9Q9BYP9 154 aa2.13□□□□□ -2.07
PTCH1-204ENST00000375290 KRTAP4-11Q9BYQ6 195 aa2.12□□□□□ -2.07
PTCH1-204ENST00000375290 KMT2DO14686 5537 aa2.09□□□□□ -2.07
PTCH1-204ENST00000375290 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.07
PTCH1-204ENST00000375290 DSTQ03001 7570 aaKnown RBP2.07□□□□□ -2.08
PTCH1-204ENST00000375290 KRTAP5-4Q6L8H1 288 aa2.05□□□□□ -2.08
PTCH1-204ENST00000375290 MACF1Q9UPN3 7388 aaKnown RBP2.04□□□□□ -2.08
PTCH1-204ENST00000375290 SSPOA2VEC9 5147 aa2.02□□□□□ -2.09
PTCH1-204ENST00000375290 MUC12Q9UKN1 5478 aa1.94□□□□□ -2.1
PTCH1-204ENST00000375290 KRTAP4-6Q9BYQ5 205 aa1.9□□□□□ -2.1
PTCH1-204ENST00000375290 KRTAP4-4Q9BYR3 166 aa1.9□□□□□ -2.11
PTCH1-204ENST00000375290 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
PTCH1-204ENST00000375290 KRTAP5-3Q6L8H2 238 aa1.81□□□□□ -2.12
PTCH1-204ENST00000375290 KRTAP5-10Q6L8G5 202 aa1.79□□□□□ -2.12
PTCH1-204ENST00000375290 AHNAK2Q8IVF2 5795 aa1.75□□□□□ -2.13
PTCH1-204ENST00000375290 MUC5ACP98088 5654 aa1.75□□□□□ -2.13
PTCH1-204ENST00000375290 KRTAP4-12Q9BQ66 201 aa1.73□□□□□ -2.13
PTCH1-204ENST00000375290 KRTAP4-2Q9BYR5 136 aa1.73□□□□□ -2.13
PTCH1-204ENST00000375290 KRTAP5-2Q701N4 177 aa1.72□□□□□ -2.13
PTCH1-204ENST00000375290 HMCN1Q96RW7 5635 aa1.67□□□□□ -2.14
PTCH1-204ENST00000375290 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
PTCH1-204ENST00000375290 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
PTCH1-204ENST00000375290 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
PTCH1-204ENST00000375290 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.15
PTCH1-204ENST00000375290 KRTAP5-8O75690 187 aa1.57□□□□□ -2.16
PTCH1-204ENST00000375290 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
PTCH1-204ENST00000375290 KRTAP5-1Q6L8H4 278 aa1.52□□□□□ -2.17
PTCH1-204ENST00000375290 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
PTCH1-204ENST00000375290 AHNAKQ09666 5890 aaKnown RBP1.45□□□□□ -2.18
PTCH1-204ENST00000375290 KRTAP5-7Q6L8G8 165 aa1.31□□□□□ -2.2
PTCH1-204ENST00000375290 PHGR1C9JFL3 82 aa1.29□□□□□ -2.2
PTCH1-204ENST00000375290 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 98.7 ms