RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 MT1AP04731 61 aa4.59□□□□□ -1.67
NUCKS1-201ENST00000367142 LRP2P98164 4655 aa4.56□□□□□ -1.68
NUCKS1-201ENST00000367142 MUC17Q685J3 4493 aa4.54□□□□□ -1.68
NUCKS1-201ENST00000367142 EPPK1P58107 5090 aaKnown RBP4.49□□□□□ -1.69
NUCKS1-201ENST00000367142 PKHD1P08F94 4074 aa4.43□□□□□ -1.7
NUCKS1-201ENST00000367142 HYDINQ4G0P3 5121 aa4.42□□□□□ -1.7
NUCKS1-201ENST00000367142 KRTAP2-3P0C7H8 128 aa4.42□□□□□ -1.7
NUCKS1-201ENST00000367142 KRTAP2-4Q9BYR9 128 aa4.42□□□□□ -1.7
NUCKS1-201ENST00000367142 KRTAP2-1Q9BYU5 128 aa4.42□□□□□ -1.7
NUCKS1-201ENST00000367142 KRTAP9-7A8MTY7 169 aa4.41□□□□□ -1.7
NUCKS1-201ENST00000367142 KMT2CQ8NEZ4 4911 aaKnown RBP4.41□□□□□ -1.7
NUCKS1-201ENST00000367142 LPAP08519 4548 aa4.4□□□□□ -1.7
NUCKS1-201ENST00000367142 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
NUCKS1-201ENST00000367142 KRTAP6-3Q3LI67 103 aa4.37□□□□□ -1.71
NUCKS1-201ENST00000367142 LCE1AQ5T7P2 110 aa4.35□□□□□ -1.71
NUCKS1-201ENST00000367142 FLGP20930 4061 aaPredicted RBP4.35□□□□□ -1.71
NUCKS1-201ENST00000367142 LCE2AQ5TA79 106 aaPredicted RBP4.35□□□□□ -1.71
NUCKS1-201ENST00000367142 KRTAP4-9Q9BYQ8 210 aa4.34□□□□□ -1.71
NUCKS1-201ENST00000367142 LCE4AQ5TA78 99 aa4.32□□□□□ -1.72
NUCKS1-201ENST00000367142 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
NUCKS1-201ENST00000367142 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
NUCKS1-201ENST00000367142 LCE1FQ5T754 118 aa4.3□□□□□ -1.72
NUCKS1-201ENST00000367142 TNXBP22105 4242 aa4.26□□□□□ -1.73
NUCKS1-201ENST00000367142 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
NUCKS1-201ENST00000367142 KRTAP9-4Q9BYQ2 154 aa4.24□□□□□ -1.73
NUCKS1-201ENST00000367142 KRTAP2-2Q9BYT5 123 aa4.21□□□□□ -1.73
NUCKS1-201ENST00000367142 SYNE2Q8WXH0 6885 aaKnown RBP4.21□□□□□ -1.73
NUCKS1-201ENST00000367142 ABCA13Q86UQ4 5058 aa4.19□□□□□ -1.74
NUCKS1-201ENST00000367142 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
NUCKS1-201ENST00000367142 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.15□□□□□ -1.75
NUCKS1-201ENST00000367142 RNF213Q63HN8 5207 aa4.1□□□□□ -1.75
NUCKS1-201ENST00000367142 FAT4Q6V0I7 4981 aa4.01□□□□□ -1.77
NUCKS1-201ENST00000367142 SYNE1Q8NF91 8797 aaKnown RBP4□□□□□ -1.77
NUCKS1-201ENST00000367142 FSIP2Q5CZC0 6907 aa3.98□□□□□ -1.77
NUCKS1-201ENST00000367142 KRTAP9-9Q9BYP9 154 aa3.93□□□□□ -1.78
NUCKS1-201ENST00000367142 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
NUCKS1-201ENST00000367142 MUC2Q02817 5179 aa3.88□□□□□ -1.79
NUCKS1-201ENST00000367142 KRTAP9-6A8MVA2 160 aa3.86□□□□□ -1.79
NUCKS1-201ENST00000367142 UBR4Q5T4S7 5183 aa3.86□□□□□ -1.79
NUCKS1-201ENST00000367142 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
NUCKS1-201ENST00000367142 NEBP20929 6669 aa3.51□□□□□ -1.85
NUCKS1-201ENST00000367142 KRTAP4-11Q9BYQ6 195 aa3.49□□□□□ -1.85
NUCKS1-201ENST00000367142 KRTAP20-2Q3LI61 65 aa3.44□□□□□ -1.86
NUCKS1-201ENST00000367142 KRTAP5-9P26371 169 aa3.44□□□□□ -1.86
NUCKS1-201ENST00000367142 KRTAP4-6Q9BYQ5 205 aa3.42□□□□□ -1.86
NUCKS1-201ENST00000367142 USH2AO75445 5202 aa3.36□□□□□ -1.87
NUCKS1-201ENST00000367142 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
NUCKS1-201ENST00000367142 KMT2DO14686 5537 aa3.27□□□□□ -1.89
NUCKS1-201ENST00000367142 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
NUCKS1-201ENST00000367142 KRTAP4-2Q9BYR5 136 aa3.26□□□□□ -1.89
NUCKS1-201ENST00000367142 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
NUCKS1-201ENST00000367142 MACF1Q9UPN3 7388 aaKnown RBP3.2□□□□□ -1.9
NUCKS1-201ENST00000367142 SSPOA2VEC9 5147 aa3.2□□□□□ -1.9
NUCKS1-201ENST00000367142 DSTQ03001 7570 aaKnown RBP3.18□□□□□ -1.9
NUCKS1-201ENST00000367142 FCGBPQ9Y6R7 5405 aaPredicted RBP3.14□□□□□ -1.91
NUCKS1-201ENST00000367142 MUC12Q9UKN1 5478 aa3.13□□□□□ -1.91
NUCKS1-201ENST00000367142 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
NUCKS1-201ENST00000367142 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
NUCKS1-201ENST00000367142 MDN1Q9NU22 5596 aa2.97□□□□□ -1.93
NUCKS1-201ENST00000367142 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
NUCKS1-201ENST00000367142 KRTAP5-3Q6L8H2 238 aa2.8□□□□□ -1.96
NUCKS1-201ENST00000367142 AHNAK2Q8IVF2 5795 aa2.61□□□□□ -1.99
NUCKS1-201ENST00000367142 MUC5ACP98088 5654 aa2.6□□□□□ -1.99
NUCKS1-201ENST00000367142 PHGR1C9JFL3 82 aa2.57□□□□□ -2
NUCKS1-201ENST00000367142 KRTAP5-8O75690 187 aa2.52□□□□□ -2.01
NUCKS1-201ENST00000367142 HMCN1Q96RW7 5635 aa2.38□□□□□ -2.03
NUCKS1-201ENST00000367142 KRTAP5-10Q6L8G5 202 aa2.35□□□□□ -2.03
NUCKS1-201ENST00000367142 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
NUCKS1-201ENST00000367142 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
NUCKS1-201ENST00000367142 KRTAP5-11Q6L8G4 156 aa2.17□□□□□ -2.06
NUCKS1-201ENST00000367142 KRTAP5-1Q6L8H4 278 aa2.12□□□□□ -2.07
NUCKS1-201ENST00000367142 AHNAKQ09666 5890 aaKnown RBP2.1□□□□□ -2.07
NUCKS1-201ENST00000367142 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
NUCKS1-201ENST00000367142 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
NUCKS1-201ENST00000367142 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.76□□□□□ -2.13
NUCKS1-201ENST00000367142 KRTAP5-7Q6L8G8 165 aa1.71□□□□□ -2.14
NUCKS1-201ENST00000367142 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 10.6 ms