RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 KRTAP20-1Q3LI63 56 aa2.39□□□□□ -2.03
VPS13A-203ENST00000360280 KRTAP9-4Q9BYQ2 154 aa2.38□□□□□ -2.03
VPS13A-203ENST00000360280 SYNE2Q8WXH0 6885 aaKnown RBP2.38□□□□□ -2.03
VPS13A-203ENST00000360280 SACSQ9NZJ4 4579 aa2.38□□□□□ -2.03
VPS13A-203ENST00000360280 MYCBP2O75592 4640 aa2.37□□□□□ -2.03
VPS13A-203ENST00000360280 LCE4AQ5TA78 99 aa2.37□□□□□ -2.03
VPS13A-203ENST00000360280 TNXBP22105 4242 aa2.36□□□□□ -2.03
VPS13A-203ENST00000360280 LPAP08519 4548 aa2.36□□□□□ -2.03
VPS13A-203ENST00000360280 KRTAP6-1Q3LI64 71 aa2.36□□□□□ -2.03
VPS13A-203ENST00000360280 KRTAP9-7A8MTY7 169 aa2.34□□□□□ -2.04
VPS13A-203ENST00000360280 KRTAP2-2Q9BYT5 123 aa2.32□□□□□ -2.04
VPS13A-203ENST00000360280 KRTAP9-6A8MVA2 160 aa2.28□□□□□ -2.04
VPS13A-203ENST00000360280 LRP2P98164 4655 aa2.25□□□□□ -2.05
VPS13A-203ENST00000360280 KRTAP9-6A0A140TA67 174 aa2.23□□□□□ -2.05
VPS13A-203ENST00000360280 KRTAP6-3Q3LI67 103 aa2.21□□□□□ -2.06
VPS13A-203ENST00000360280 RYR1P21817 5038 aa2.2□□□□□ -2.06
VPS13A-203ENST00000360280 MUC17Q685J3 4493 aa2.18□□□□□ -2.06
VPS13A-203ENST00000360280 KRTAP9-9Q9BYP9 154 aa2.17□□□□□ -2.06
VPS13A-203ENST00000360280 DNHD1Q96M86 4753 aa2.16□□□□□ -2.06
VPS13A-203ENST00000360280 LCE2AQ5TA79 106 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-203ENST00000360280 SYNE1Q8NF91 8797 aaKnown RBP2.16□□□□□ -2.06
VPS13A-203ENST00000360280 KRTAP4-11Q9BYQ6 195 aa2.11□□□□□ -2.07
VPS13A-203ENST00000360280 RYR3Q15413 4870 aa2.09□□□□□ -2.07
VPS13A-203ENST00000360280 KMT2CQ8NEZ4 4911 aaKnown RBP2.06□□□□□ -2.08
VPS13A-203ENST00000360280 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-203ENST00000360280 KRTAP20-2Q3LI61 65 aa1.95□□□□□ -2.1
VPS13A-203ENST00000360280 PCLOQ9Y6V0 5065 aa1.93□□□□□ -2.1
VPS13A-203ENST00000360280 HERC2O95714 4834 aa1.93□□□□□ -2.1
VPS13A-203ENST00000360280 HMCN2Q8NDA2 5059 aa1.92□□□□□ -2.1
VPS13A-203ENST00000360280 HERC1Q15751 4861 aa1.83□□□□□ -2.12
VPS13A-203ENST00000360280 KRTAP4-4Q9BYR3 166 aa1.82□□□□□ -2.12
VPS13A-203ENST00000360280 KRTAP4-6Q9BYQ5 205 aa1.82□□□□□ -2.12
VPS13A-203ENST00000360280 KRTAP5-9P26371 169 aa1.79□□□□□ -2.12
VPS13A-203ENST00000360280 FSIP2Q5CZC0 6907 aa1.78□□□□□ -2.12
VPS13A-203ENST00000360280 RYR2Q92736 4967 aa1.77□□□□□ -2.13
VPS13A-203ENST00000360280 BIRC6Q9NR09 4857 aa1.77□□□□□ -2.13
VPS13A-203ENST00000360280 KRTAP4-12Q9BQ66 201 aa1.73□□□□□ -2.13
VPS13A-203ENST00000360280 KRTAP4-2Q9BYR5 136 aa1.73□□□□□ -2.13
VPS13A-203ENST00000360280 KRTAP5-5Q701N2 237 aaPredicted RBP1.72□□□□□ -2.13
VPS13A-203ENST00000360280 KRTAP5-4Q6L8H1 288 aa1.71□□□□□ -2.13
VPS13A-203ENST00000360280 HYDINQ4G0P3 5121 aa1.69□□□□□ -2.14
VPS13A-203ENST00000360280 KIAA1109Q2LD37 5005 aa1.69□□□□□ -2.14
VPS13A-203ENST00000360280 MUC2Q02817 5179 aa1.69□□□□□ -2.14
VPS13A-203ENST00000360280 OBSCNQ5VST9 7968 aa1.64□□□□□ -2.15
VPS13A-203ENST00000360280 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
VPS13A-203ENST00000360280 EPPK1P58107 5090 aaKnown RBP1.55□□□□□ -2.16
VPS13A-203ENST00000360280 DSTQ03001 7570 aaKnown RBP1.52□□□□□ -2.17
VPS13A-203ENST00000360280 KMT2DO14686 5537 aa1.5□□□□□ -2.17
VPS13A-203ENST00000360280 KRTAP5-3Q6L8H2 238 aa1.49□□□□□ -2.17
VPS13A-203ENST00000360280 FCGBPQ9Y6R7 5405 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-203ENST00000360280 MACF1Q9UPN3 7388 aaKnown RBP1.47□□□□□ -2.17
VPS13A-203ENST00000360280 UBR4Q5T4S7 5183 aa1.47□□□□□ -2.17
VPS13A-203ENST00000360280 ABCA13Q86UQ4 5058 aa1.46□□□□□ -2.18
VPS13A-203ENST00000360280 FAT4Q6V0I7 4981 aa1.45□□□□□ -2.18
VPS13A-203ENST00000360280 KRTAP5-10Q6L8G5 202 aa1.43□□□□□ -2.18
VPS13A-203ENST00000360280 RNF213Q63HN8 5207 aa1.41□□□□□ -2.18
VPS13A-203ENST00000360280 NEBP20929 6669 aa1.4□□□□□ -2.19
VPS13A-203ENST00000360280 PHGR1C9JFL3 82 aa1.4□□□□□ -2.19
VPS13A-203ENST00000360280 SSPOA2VEC9 5147 aa1.3□□□□□ -2.2
VPS13A-203ENST00000360280 KRTAP5-2Q701N4 177 aa1.29□□□□□ -2.2
VPS13A-203ENST00000360280 KRTAP5-8O75690 187 aa1.26□□□□□ -2.21
VPS13A-203ENST00000360280 MDN1Q9NU22 5596 aa1.26□□□□□ -2.21
VPS13A-203ENST00000360280 KRTAP5-11Q6L8G4 156 aa1.22□□□□□ -2.21
VPS13A-203ENST00000360280 KRTAP5-1Q6L8H4 278 aa1.2□□□□□ -2.22
VPS13A-203ENST00000360280 MUC5ACP98088 5654 aa1.2□□□□□ -2.22
VPS13A-203ENST00000360280 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
VPS13A-203ENST00000360280 USH2AO75445 5202 aa1.15□□□□□ -2.23
VPS13A-203ENST00000360280 KRTAP21-2Q3LI59 83 aa1.11□□□□□ -2.23
VPS13A-203ENST00000360280 MUC12Q9UKN1 5478 aa1.06□□□□□ -2.24
VPS13A-203ENST00000360280 MUC5BQ9HC84 5762 aaPredicted RBP1.05□□□□□ -2.24
VPS13A-203ENST00000360280 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.02□□□□□ -2.25
VPS13A-203ENST00000360280 HMCN1Q96RW7 5635 aa0.99□□□□□ -2.25
VPS13A-203ENST00000360280 GPR98Q8WXG9 6306 aa0.91□□□□□ -2.26
VPS13A-203ENST00000360280 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
VPS13A-203ENST00000360280 AHNAKQ09666 5890 aaKnown RBP0.85□□□□□ -2.27
VPS13A-203ENST00000360280 AHNAK2Q8IVF2 5795 aa0.85□□□□□ -2.27
VPS13A-203ENST00000360280 KRTAP5-7Q6L8G8 165 aa0.84□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 58.2 ms