RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 KRTAP9-6A8MVA2 160 aa4.26□□□□□ -1.73
RTN3-203ENST00000341307 LCE3CQ5T5A8 94 aa4.26□□□□□ -1.73
RTN3-203ENST00000341307 KRTAP9-7A8MTY7 169 aa4.24□□□□□ -1.73
RTN3-203ENST00000341307 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
RTN3-203ENST00000341307 MUC12Q9UKN1 5478 aa4.21□□□□□ -1.74
RTN3-203ENST00000341307 LCE5AQ5TCM9 118 aa4.18□□□□□ -1.74
RTN3-203ENST00000341307 LOC100996750A0A140TA64 210 aa4.14□□□□□ -1.75
RTN3-203ENST00000341307 KRTAP4-6Q9BYQ5 205 aa4.14□□□□□ -1.75
RTN3-203ENST00000341307 MDN1Q9NU22 5596 aa4.13□□□□□ -1.75
RTN3-203ENST00000341307 KRTAP19-7Q3SYF9 63 aa4.09□□□□□ -1.75
RTN3-203ENST00000341307 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.76
RTN3-203ENST00000341307 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
RTN3-203ENST00000341307 KRTAP9-4Q9BYQ2 154 aa4.07□□□□□ -1.76
RTN3-203ENST00000341307 SPRR2FQ96RM1 72 aa4.01□□□□□ -1.77
RTN3-203ENST00000341307 KRTAP5-9P26371 169 aa3.99□□□□□ -1.77
RTN3-203ENST00000341307 KRTAP4-7Q9BYR0 210 aa3.99□□□□□ -1.77
RTN3-203ENST00000341307 MT1EP04732 61 aa3.98□□□□□ -1.77
RTN3-203ENST00000341307 KRTAP12-4P60329 112 aa3.94□□□□□ -1.78
RTN3-203ENST00000341307 NEBP20929 6669 aa3.94□□□□□ -1.78
RTN3-203ENST00000341307 MT1LQ93083 61 aa3.93□□□□□ -1.78
RTN3-203ENST00000341307 KRTAP9-9Q9BYP9 154 aa3.92□□□□□ -1.78
RTN3-203ENST00000341307 SPRR2EP22531 72 aa3.87□□□□□ -1.79
RTN3-203ENST00000341307 SPRR2BP35325 72 aa3.87□□□□□ -1.79
RTN3-203ENST00000341307 SPRR2AP35326 72 aa3.87□□□□□ -1.79
RTN3-203ENST00000341307 LCE1AQ5T7P2 110 aa3.85□□□□□ -1.79
RTN3-203ENST00000341307 LCE4AQ5TA78 99 aa3.85□□□□□ -1.79
RTN3-203ENST00000341307 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
RTN3-203ENST00000341307 KRTAP4-3Q9BYR4 195 aa3.81□□□□□ -1.8
RTN3-203ENST00000341307 LCE1FQ5T754 118 aa3.8□□□□□ -1.8
RTN3-203ENST00000341307 KRTAP2-2Q9BYT5 123 aa3.8□□□□□ -1.8
RTN3-203ENST00000341307 KRTAP19-3Q7Z4W3 81 aa3.77□□□□□ -1.81
RTN3-203ENST00000341307 MT1MQ8N339 61 aa3.74□□□□□ -1.81
RTN3-203ENST00000341307 SPRR2DP22532 72 aa3.72□□□□□ -1.81
RTN3-203ENST00000341307 MT1GP13640 62 aa3.72□□□□□ -1.81
RTN3-203ENST00000341307 KRTAP20-1Q3LI63 56 aa3.69□□□□□ -1.82
RTN3-203ENST00000341307 LCE3BQ5TA77 95 aa3.61□□□□□ -1.83
RTN3-203ENST00000341307 KRTAP4-12Q9BQ66 201 aa3.6□□□□□ -1.83
RTN3-203ENST00000341307 PRM1P04553 51 aa3.59□□□□□ -1.83
RTN3-203ENST00000341307 KRTAP5-5Q701N2 237 aaPredicted RBP3.53□□□□□ -1.84
RTN3-203ENST00000341307 KRTAP4-9Q9BYQ8 210 aa3.52□□□□□ -1.85
RTN3-203ENST00000341307 SYNE1Q8NF91 8797 aaKnown RBP3.5□□□□□ -1.85
RTN3-203ENST00000341307 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
RTN3-203ENST00000341307 LCE1EQ5T753 118 aa3.44□□□□□ -1.86
RTN3-203ENST00000341307 MT3P25713 68 aa3.43□□□□□ -1.86
RTN3-203ENST00000341307 MT1AP04731 61 aa3.4□□□□□ -1.87
RTN3-203ENST00000341307 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
RTN3-203ENST00000341307 LCE1DQ5T752 114 aa3.37□□□□□ -1.87
RTN3-203ENST00000341307 LCE3DQ9BYE3 92 aa3.37□□□□□ -1.87
RTN3-203ENST00000341307 KRTAP6-1Q3LI64 71 aa3.36□□□□□ -1.87
RTN3-203ENST00000341307 MT4P47944 62 aa3.32□□□□□ -1.88
RTN3-203ENST00000341307 HMCN1Q96RW7 5635 aa3.3□□□□□ -1.88
RTN3-203ENST00000341307 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
RTN3-203ENST00000341307 KRTAP5-4Q6L8H1 288 aa3.25□□□□□ -1.89
RTN3-203ENST00000341307 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
RTN3-203ENST00000341307 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
RTN3-203ENST00000341307 KRTAP4-11Q9BYQ6 195 aa3.15□□□□□ -1.91
RTN3-203ENST00000341307 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.91
RTN3-203ENST00000341307 GPR98Q8WXG9 6306 aa3.01□□□□□ -1.93
RTN3-203ENST00000341307 AHNAK2Q8IVF2 5795 aa3□□□□□ -1.93
RTN3-203ENST00000341307 KRTAP5-10Q6L8G5 202 aa2.9□□□□□ -1.95
RTN3-203ENST00000341307 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
RTN3-203ENST00000341307 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
RTN3-203ENST00000341307 KRTAP5-8O75690 187 aa2.68□□□□□ -1.98
RTN3-203ENST00000341307 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
RTN3-203ENST00000341307 MUC5ACP98088 5654 aa2.54□□□□□ -2
RTN3-203ENST00000341307 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
RTN3-203ENST00000341307 LCE1BQ5T7P3 118 aa2.49□□□□□ -2.01
RTN3-203ENST00000341307 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
RTN3-203ENST00000341307 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
RTN3-203ENST00000341307 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
RTN3-203ENST00000341307 KRTAP21-1Q3LI58 79 aa2.33□□□□□ -2.04
RTN3-203ENST00000341307 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
RTN3-203ENST00000341307 KRTAP21-2Q3LI59 83 aa2.17□□□□□ -2.06
RTN3-203ENST00000341307 KRTAP5-11Q6L8G4 156 aa2.12□□□□□ -2.07
RTN3-203ENST00000341307 KRTAP4-4Q9BYR3 166 aa2.03□□□□□ -2.08
RTN3-203ENST00000341307 PHGR1C9JFL3 82 aa1.8□□□□□ -2.12
RTN3-203ENST00000341307 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 70.1 ms