RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 LCE4AQ5TA78 99 aa1.21□□□□□ -2.22
CSMD3-201ENST00000297405 LRP2P98164 4655 aa1.2□□□□□ -2.22
CSMD3-201ENST00000297405 BIRC6Q9NR09 4857 aa1.19□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP9-4Q9BYQ2 154 aa1.19□□□□□ -2.22
CSMD3-201ENST00000297405 SYNE2Q8WXH0 6885 aaKnown RBP1.19□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP9-6A8MVA2 160 aa1.19□□□□□ -2.22
CSMD3-201ENST00000297405 LCE5AQ5TCM9 118 aa1.19□□□□□ -2.22
CSMD3-201ENST00000297405 RYR3Q15413 4870 aa1.19□□□□□ -2.22
CSMD3-201ENST00000297405 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP19-2Q3LHN2 52 aa1.18□□□□□ -2.22
CSMD3-201ENST00000297405 HERC2O95714 4834 aa1.18□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP17-1Q9BYP8 105 aa1.17□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP4-7Q9BYR0 210 aa1.16□□□□□ -2.22
CSMD3-201ENST00000297405 LPAP08519 4548 aa1.15□□□□□ -2.22
CSMD3-201ENST00000297405 EPPK1P58107 5090 aaKnown RBP1.15□□□□□ -2.22
CSMD3-201ENST00000297405 KRTAP9-6A0A140TA67 174 aa1.15□□□□□ -2.23
CSMD3-201ENST00000297405 KRTAP6-3Q3LI67 103 aa1.14□□□□□ -2.23
CSMD3-201ENST00000297405 UBR4Q5T4S7 5183 aa1.14□□□□□ -2.23
CSMD3-201ENST00000297405 LOC100996750A0A140TA64 210 aa1.13□□□□□ -2.23
CSMD3-201ENST00000297405 MT4P47944 62 aa1.13□□□□□ -2.23
CSMD3-201ENST00000297405 ABCA13Q86UQ4 5058 aa1.13□□□□□ -2.23
CSMD3-201ENST00000297405 SSPOA2VEC9 5147 aa1.12□□□□□ -2.23
CSMD3-201ENST00000297405 KRTAP9-7A8MTY7 169 aa1.12□□□□□ -2.23
CSMD3-201ENST00000297405 HERC1Q15751 4861 aa1.11□□□□□ -2.23
CSMD3-201ENST00000297405 KRTAP6-1Q3LI64 71 aa1.11□□□□□ -2.23
CSMD3-201ENST00000297405 LCE2AQ5TA79 106 aaPredicted RBP1.11□□□□□ -2.23
CSMD3-201ENST00000297405 FAT4Q6V0I7 4981 aa1.11□□□□□ -2.23
CSMD3-201ENST00000297405 KIAA1109Q2LD37 5005 aa1.09□□□□□ -2.23
CSMD3-201ENST00000297405 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
CSMD3-201ENST00000297405 HMCN2Q8NDA2 5059 aa1.08□□□□□ -2.24
CSMD3-201ENST00000297405 KMT2DO14686 5537 aa1.08□□□□□ -2.24
CSMD3-201ENST00000297405 LCE1CQ5T751 118 aa1.07□□□□□ -2.24
CSMD3-201ENST00000297405 LCE1EQ5T753 118 aa1.07□□□□□ -2.24
CSMD3-201ENST00000297405 LCE1FQ5T754 118 aa1.07□□□□□ -2.24
CSMD3-201ENST00000297405 KRTAP4-9Q9BYQ8 210 aa1.07□□□□□ -2.24
CSMD3-201ENST00000297405 KRTAP4-3Q9BYR4 195 aa1.04□□□□□ -2.24
CSMD3-201ENST00000297405 KRTAP9-9Q9BYP9 154 aa1.03□□□□□ -2.24
CSMD3-201ENST00000297405 MUC5BQ9HC84 5762 aaPredicted RBP1.03□□□□□ -2.25
CSMD3-201ENST00000297405 USH2AO75445 5202 aa1.02□□□□□ -2.25
CSMD3-201ENST00000297405 RNF213Q63HN8 5207 aa1.02□□□□□ -2.25
CSMD3-201ENST00000297405 MUC2Q02817 5179 aa1□□□□□ -2.25
CSMD3-201ENST00000297405 DSTQ03001 7570 aaKnown RBP0.99□□□□□ -2.25
CSMD3-201ENST00000297405 KRTAP20-1Q3LI63 56 aa0.98□□□□□ -2.25
CSMD3-201ENST00000297405 KRTAP4-11Q9BYQ6 195 aa0.98□□□□□ -2.25
CSMD3-201ENST00000297405 OBSCNQ5VST9 7968 aa0.97□□□□□ -2.25
CSMD3-201ENST00000297405 GPR98Q8WXG9 6306 aa0.96□□□□□ -2.26
CSMD3-201ENST00000297405 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.96□□□□□ -2.26
CSMD3-201ENST00000297405 FSIP2Q5CZC0 6907 aa0.96□□□□□ -2.26
CSMD3-201ENST00000297405 MDN1Q9NU22 5596 aa0.95□□□□□ -2.26
CSMD3-201ENST00000297405 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
CSMD3-201ENST00000297405 KRTAP5-9P26371 169 aa0.92□□□□□ -2.26
CSMD3-201ENST00000297405 AHNAKQ09666 5890 aaKnown RBP0.92□□□□□ -2.26
CSMD3-201ENST00000297405 KRTAP5-5Q701N2 237 aaPredicted RBP0.92□□□□□ -2.26
CSMD3-201ENST00000297405 HMCN1Q96RW7 5635 aa0.9□□□□□ -2.27
CSMD3-201ENST00000297405 NEBP20929 6669 aa0.89□□□□□ -2.27
CSMD3-201ENST00000297405 KRTAP4-6Q9BYQ5 205 aa0.86□□□□□ -2.27
CSMD3-201ENST00000297405 KRTAP5-4Q6L8H1 288 aa0.86□□□□□ -2.27
CSMD3-201ENST00000297405 MUC19Q7Z5P9 8384 aa0.85□□□□□ -2.27
CSMD3-201ENST00000297405 MUC5ACP98088 5654 aa0.84□□□□□ -2.27
CSMD3-201ENST00000297405 KRTAP20-2Q3LI61 65 aa0.84□□□□□ -2.27
CSMD3-201ENST00000297405 FCGBPQ9Y6R7 5405 aaPredicted RBP0.82□□□□□ -2.28
CSMD3-201ENST00000297405 MUC12Q9UKN1 5478 aa0.82□□□□□ -2.28
CSMD3-201ENST00000297405 KRTAP5-10Q6L8G5 202 aa0.79□□□□□ -2.28
CSMD3-201ENST00000297405 KRTAP4-4Q9BYR3 166 aa0.77□□□□□ -2.29
CSMD3-201ENST00000297405 KRTAP4-2Q9BYR5 136 aa0.76□□□□□ -2.29
CSMD3-201ENST00000297405 KRTAP5-3Q6L8H2 238 aa0.75□□□□□ -2.29
CSMD3-201ENST00000297405 KRTAP4-12Q9BQ66 201 aa0.74□□□□□ -2.29
CSMD3-201ENST00000297405 KRTAP5-11Q6L8G4 156 aa0.71□□□□□ -2.3
CSMD3-201ENST00000297405 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
CSMD3-201ENST00000297405 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.7□□□□□ -2.3
CSMD3-201ENST00000297405 KRTAP5-2Q701N4 177 aa0.67□□□□□ -2.3
CSMD3-201ENST00000297405 KRTAP5-1Q6L8H4 278 aa0.64□□□□□ -2.31
CSMD3-201ENST00000297405 KRTAP5-8O75690 187 aa0.63□□□□□ -2.31
CSMD3-201ENST00000297405 KRTAP5-7Q6L8G8 165 aa0.61□□□□□ -2.31
CSMD3-201ENST00000297405 KRTAP21-2Q3LI59 83 aa0.59□□□□□ -2.31
CSMD3-201ENST00000297405 PHGR1C9JFL3 82 aa0.57□□□□□ -2.32
CSMD3-201ENST00000297405 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 37.7 ms