RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 LOC100996750A0A140TA64 210 aa5.71□□□□□ -1.49
VPS54-201ENST00000272322 OBSCNQ5VST9 7968 aa5.7□□□□□ -1.5
VPS54-201ENST00000272322 MACF1Q9UPN3 7388 aaKnown RBP5.69□□□□□ -1.5
VPS54-201ENST00000272322 SYNE2Q8WXH0 6885 aaKnown RBP5.66□□□□□ -1.5
VPS54-201ENST00000272322 MT1GP13640 62 aa5.6□□□□□ -1.51
VPS54-201ENST00000272322 KRTAP19-6Q3LI70 58 aa5.6□□□□□ -1.51
VPS54-201ENST00000272322 INE1O15225 51 aa5.56□□□□□ -1.52
VPS54-201ENST00000272322 LCE2DQ5TA82 110 aaPredicted RBP5.55□□□□□ -1.52
VPS54-201ENST00000272322 MDN1Q9NU22 5596 aa5.51□□□□□ -1.53
VPS54-201ENST00000272322 SPRR2FQ96RM1 72 aa5.49□□□□□ -1.53
VPS54-201ENST00000272322 KRTAP2-3P0C7H8 128 aa5.41□□□□□ -1.54
VPS54-201ENST00000272322 KRTAP2-4Q9BYR9 128 aa5.41□□□□□ -1.54
VPS54-201ENST00000272322 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
VPS54-201ENST00000272322 MT1MQ8N339 61 aa5.39□□□□□ -1.55
VPS54-201ENST00000272322 KRTAP19-3Q7Z4W3 81 aa5.38□□□□□ -1.55
VPS54-201ENST00000272322 KRTAP9-2Q9BYQ4 174 aa5.22□□□□□ -1.57
VPS54-201ENST00000272322 LCE3BQ5TA77 95 aa5.21□□□□□ -1.57
VPS54-201ENST00000272322 KRTAP4-9Q9BYQ8 210 aa5.19□□□□□ -1.58
VPS54-201ENST00000272322 LCE5AQ5TCM9 118 aa5.16□□□□□ -1.58
VPS54-201ENST00000272322 KRTAP19-4Q3LI73 84 aa5.14□□□□□ -1.59
VPS54-201ENST00000272322 KRTAP12-4P60329 112 aa5.07□□□□□ -1.6
VPS54-201ENST00000272322 KRTAP6-1Q3LI64 71 aa4.98□□□□□ -1.61
VPS54-201ENST00000272322 SPRR2EP22531 72 aa4.95□□□□□ -1.62
VPS54-201ENST00000272322 SPRR2BP35325 72 aa4.95□□□□□ -1.62
VPS54-201ENST00000272322 SPRR2AP35326 72 aa4.95□□□□□ -1.62
VPS54-201ENST00000272322 LCE1AQ5T7P2 110 aa4.92□□□□□ -1.62
VPS54-201ENST00000272322 MT1AP04731 61 aa4.73□□□□□ -1.65
VPS54-201ENST00000272322 SPRR2DP22532 72 aa4.7□□□□□ -1.66
VPS54-201ENST00000272322 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
VPS54-201ENST00000272322 KRTAP5-9P26371 169 aa4.7□□□□□ -1.66
VPS54-201ENST00000272322 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.63□□□□□ -1.67
VPS54-201ENST00000272322 KRTAP9-7A8MTY7 169 aa4.62□□□□□ -1.67
VPS54-201ENST00000272322 LCE3EQ5T5B0 92 aa4.59□□□□□ -1.68
VPS54-201ENST00000272322 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
VPS54-201ENST00000272322 KRTAP9-6A0A140TA67 174 aa4.53□□□□□ -1.68
VPS54-201ENST00000272322 KRTAP6-2Q3LI66 62 aa4.52□□□□□ -1.69
VPS54-201ENST00000272322 PRM1P04553 51 aa4.48□□□□□ -1.69
VPS54-201ENST00000272322 KRTAP9-4Q9BYQ2 154 aa4.48□□□□□ -1.69
VPS54-201ENST00000272322 KRTAP6-3Q3LI67 103 aa4.42□□□□□ -1.7
VPS54-201ENST00000272322 NEBP20929 6669 aa4.4□□□□□ -1.7
VPS54-201ENST00000272322 MT4P47944 62 aa4.37□□□□□ -1.71
VPS54-201ENST00000272322 MT3P25713 68 aa4.31□□□□□ -1.72
VPS54-201ENST00000272322 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
VPS54-201ENST00000272322 HMCN1Q96RW7 5635 aa4.15□□□□□ -1.75
VPS54-201ENST00000272322 KRTAP5-4Q6L8H1 288 aa4□□□□□ -1.77
VPS54-201ENST00000272322 KRTAP20-2Q3LI61 65 aa3.96□□□□□ -1.78
VPS54-201ENST00000272322 LCE1DQ5T752 114 aa3.94□□□□□ -1.78
VPS54-201ENST00000272322 LCE1BQ5T7P3 118 aa3.83□□□□□ -1.8
VPS54-201ENST00000272322 MUC5ACP98088 5654 aa3.83□□□□□ -1.8
VPS54-201ENST00000272322 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
VPS54-201ENST00000272322 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
VPS54-201ENST00000272322 KRTAP20-1Q3LI63 56 aa3.73□□□□□ -1.81
VPS54-201ENST00000272322 KRTAP5-2Q701N4 177 aa3.71□□□□□ -1.82
VPS54-201ENST00000272322 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
VPS54-201ENST00000272322 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
VPS54-201ENST00000272322 KRTAP4-11Q9BYQ6 195 aa3.5□□□□□ -1.85
VPS54-201ENST00000272322 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
VPS54-201ENST00000272322 KRTAP5-10Q6L8G5 202 aa3.34□□□□□ -1.87
VPS54-201ENST00000272322 KRTAP4-2Q9BYR5 136 aa3.34□□□□□ -1.87
VPS54-201ENST00000272322 MUC5BQ9HC84 5762 aaPredicted RBP3.33□□□□□ -1.88
VPS54-201ENST00000272322 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
VPS54-201ENST00000272322 KRTAP5-1Q6L8H4 278 aa3.29□□□□□ -1.88
VPS54-201ENST00000272322 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
VPS54-201ENST00000272322 LCE1CQ5T751 118 aa3.2□□□□□ -1.9
VPS54-201ENST00000272322 KRTAP5-8O75690 187 aa3.12□□□□□ -1.91
VPS54-201ENST00000272322 KRTAP4-12Q9BQ66 201 aa3.11□□□□□ -1.91
VPS54-201ENST00000272322 KRTAP21-2Q3LI59 83 aa3.1□□□□□ -1.91
VPS54-201ENST00000272322 GPR98Q8WXG9 6306 aa3.05□□□□□ -1.92
VPS54-201ENST00000272322 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.87□□□□□ -1.95
VPS54-201ENST00000272322 KRTAP5-7Q6L8G8 165 aa2.78□□□□□ -1.96
VPS54-201ENST00000272322 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
VPS54-201ENST00000272322 KRTAP9-9Q9BYP9 154 aa2.72□□□□□ -1.97
VPS54-201ENST00000272322 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
VPS54-201ENST00000272322 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
VPS54-201ENST00000272322 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
VPS54-201ENST00000272322 PHGR1C9JFL3 82 aa2.41□□□□□ -2.02
VPS54-201ENST00000272322 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 9.8 ms