RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 LCE3CQ5T5A8 94 aa5.36□□□□□ -1.55
HDHD3-201ENST00000238379 KRTAP5-9P26371 169 aa5.32□□□□□ -1.56
HDHD3-201ENST00000238379 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
HDHD3-201ENST00000238379 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.32□□□□□ -1.56
HDHD3-201ENST00000238379 KRTAP19-3Q7Z4W3 81 aa5.3□□□□□ -1.56
HDHD3-201ENST00000238379 KRTAP4-7Q9BYR0 210 aa5.27□□□□□ -1.57
HDHD3-201ENST00000238379 LOC100996750A0A140TA64 210 aa5.26□□□□□ -1.57
HDHD3-201ENST00000238379 KRTAP4-6Q9BYQ5 205 aa5.26□□□□□ -1.57
HDHD3-201ENST00000238379 MT1GP13640 62 aa5.25□□□□□ -1.57
HDHD3-201ENST00000238379 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
HDHD3-201ENST00000238379 KRTAP6-3Q3LI67 103 aa5.2□□□□□ -1.58
HDHD3-201ENST00000238379 LUZP6Q538Z0 58 aa5.2□□□□□ -1.58
HDHD3-201ENST00000238379 LCE5AQ5TCM9 118 aa5.2□□□□□ -1.58
HDHD3-201ENST00000238379 MT1MQ8N339 61 aa5.19□□□□□ -1.58
HDHD3-201ENST00000238379 KRTAP9-7A8MTY7 169 aa5.18□□□□□ -1.58
HDHD3-201ENST00000238379 LCE1AQ5T7P2 110 aa5.16□□□□□ -1.58
HDHD3-201ENST00000238379 KRTAP4-3Q9BYR4 195 aa5.12□□□□□ -1.59
HDHD3-201ENST00000238379 MDN1Q9NU22 5596 aa5.11□□□□□ -1.59
HDHD3-201ENST00000238379 KRTAP9-6A8MVA2 160 aa5.1□□□□□ -1.59
HDHD3-201ENST00000238379 SPRR2EP22531 72 aa5.09□□□□□ -1.6
HDHD3-201ENST00000238379 SPRR2BP35325 72 aa5.09□□□□□ -1.6
HDHD3-201ENST00000238379 SPRR2AP35326 72 aa5.09□□□□□ -1.6
HDHD3-201ENST00000238379 KRTAP9-9Q9BYP9 154 aa5.09□□□□□ -1.6
HDHD3-201ENST00000238379 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
HDHD3-201ENST00000238379 DSTQ03001 7570 aaKnown RBP4.94□□□□□ -1.62
HDHD3-201ENST00000238379 SPRR2DP22532 72 aa4.9□□□□□ -1.63
HDHD3-201ENST00000238379 NEBP20929 6669 aa4.86□□□□□ -1.63
HDHD3-201ENST00000238379 KRTAP4-12Q9BQ66 201 aa4.79□□□□□ -1.64
HDHD3-201ENST00000238379 KRTAP2-3P0C7H8 128 aa4.71□□□□□ -1.66
HDHD3-201ENST00000238379 LCE3BQ5TA77 95 aa4.71□□□□□ -1.66
HDHD3-201ENST00000238379 KRTAP2-4Q9BYR9 128 aa4.71□□□□□ -1.66
HDHD3-201ENST00000238379 KRTAP2-1Q9BYU5 128 aa4.71□□□□□ -1.66
HDHD3-201ENST00000238379 KRTAP5-5Q701N2 237 aaPredicted RBP4.69□□□□□ -1.66
HDHD3-201ENST00000238379 MT3P25713 68 aa4.65□□□□□ -1.67
HDHD3-201ENST00000238379 MT1AP04731 61 aa4.59□□□□□ -1.67
HDHD3-201ENST00000238379 KRTAP6-1Q3LI64 71 aa4.56□□□□□ -1.68
HDHD3-201ENST00000238379 KRTAP5-4Q6L8H1 288 aa4.46□□□□□ -1.69
HDHD3-201ENST00000238379 KRTAP2-2Q9BYT5 123 aa4.44□□□□□ -1.7
HDHD3-201ENST00000238379 KRTAP20-1Q3LI63 56 aa4.43□□□□□ -1.7
HDHD3-201ENST00000238379 SYNE1Q8NF91 8797 aaKnown RBP4.43□□□□□ -1.7
HDHD3-201ENST00000238379 LCE1FQ5T754 118 aa4.32□□□□□ -1.72
HDHD3-201ENST00000238379 KRTAP12-4P60329 112 aa4.32□□□□□ -1.72
HDHD3-201ENST00000238379 INE1O15225 51 aa4.31□□□□□ -1.72
HDHD3-201ENST00000238379 MT4P47944 62 aa4.26□□□□□ -1.73
HDHD3-201ENST00000238379 LCE1DQ5T752 114 aa4.24□□□□□ -1.73
HDHD3-201ENST00000238379 KRTAP4-9Q9BYQ8 210 aa4.22□□□□□ -1.73
HDHD3-201ENST00000238379 KRTAP5-3Q6L8H2 238 aa4.21□□□□□ -1.74
HDHD3-201ENST00000238379 KRTAP6-2Q3LI66 62 aa4.2□□□□□ -1.74
HDHD3-201ENST00000238379 KRTAP20-2Q3LI61 65 aa4.16□□□□□ -1.74
HDHD3-201ENST00000238379 HMCN1Q96RW7 5635 aa4.13□□□□□ -1.75
HDHD3-201ENST00000238379 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.76
HDHD3-201ENST00000238379 KRTAP5-2Q701N4 177 aa4.05□□□□□ -1.76
HDHD3-201ENST00000238379 LCE3DQ9BYE3 92 aa4.02□□□□□ -1.77
HDHD3-201ENST00000238379 KRTAP4-11Q9BYQ6 195 aa4□□□□□ -1.77
HDHD3-201ENST00000238379 LCE3EQ5T5B0 92 aa3.91□□□□□ -1.78
HDHD3-201ENST00000238379 OBSCNQ5VST9 7968 aa3.89□□□□□ -1.79
HDHD3-201ENST00000238379 AHNAK2Q8IVF2 5795 aa3.61□□□□□ -1.83
HDHD3-201ENST00000238379 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
HDHD3-201ENST00000238379 GPR98Q8WXG9 6306 aa3.54□□□□□ -1.84
HDHD3-201ENST00000238379 KRTAP5-1Q6L8H4 278 aa3.51□□□□□ -1.85
HDHD3-201ENST00000238379 KRTAP5-8O75690 187 aa3.47□□□□□ -1.85
HDHD3-201ENST00000238379 KRTAP5-10Q6L8G5 202 aa3.46□□□□□ -1.86
HDHD3-201ENST00000238379 PRM1P04553 51 aa3.43□□□□□ -1.86
HDHD3-201ENST00000238379 LCE1BQ5T7P3 118 aa3.38□□□□□ -1.87
HDHD3-201ENST00000238379 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
HDHD3-201ENST00000238379 KRTAP5-7Q6L8G8 165 aa3.37□□□□□ -1.87
HDHD3-201ENST00000238379 MUC5ACP98088 5654 aa3.36□□□□□ -1.87
HDHD3-201ENST00000238379 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.15□□□□□ -1.91
HDHD3-201ENST00000238379 KRTAP21-2Q3LI59 83 aa3□□□□□ -1.93
HDHD3-201ENST00000238379 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
HDHD3-201ENST00000238379 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
HDHD3-201ENST00000238379 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
HDHD3-201ENST00000238379 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
HDHD3-201ENST00000238379 PHGR1C9JFL3 82 aa2.56□□□□□ -2
HDHD3-201ENST00000238379 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
HDHD3-201ENST00000238379 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
HDHD3-201ENST00000238379 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 24.4 ms