RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 SPRR2FQ96RM1 72 aa6.96□□□□□ -1.3
TNFRSF1A-201ENST00000162749 LCE3CQ5T5A8 94 aa6.93□□□□□ -1.3
TNFRSF1A-201ENST00000162749 INE1O15225 51 aa6.92□□□□□ -1.3
TNFRSF1A-201ENST00000162749 KRTAP5-9P26371 169 aa6.85□□□□□ -1.31
TNFRSF1A-201ENST00000162749 KRTAP19-4Q3LI73 84 aa6.85□□□□□ -1.31
TNFRSF1A-201ENST00000162749 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.84□□□□□ -1.32
TNFRSF1A-201ENST00000162749 KRTAP19-3Q7Z4W3 81 aa6.83□□□□□ -1.32
TNFRSF1A-201ENST00000162749 MDN1Q9NU22 5596 aa6.83□□□□□ -1.32
TNFRSF1A-201ENST00000162749 KRTAP4-7Q9BYR0 210 aa6.82□□□□□ -1.32
TNFRSF1A-201ENST00000162749 MT1GP13640 62 aa6.76□□□□□ -1.33
TNFRSF1A-201ENST00000162749 LCE5AQ5TCM9 118 aa6.72□□□□□ -1.33
TNFRSF1A-201ENST00000162749 MT1MQ8N339 61 aa6.7□□□□□ -1.34
TNFRSF1A-201ENST00000162749 KRTAP6-3Q3LI67 103 aa6.67□□□□□ -1.34
TNFRSF1A-201ENST00000162749 KRTAP9-6A8MVA2 160 aa6.66□□□□□ -1.34
TNFRSF1A-201ENST00000162749 LCE1AQ5T7P2 110 aa6.64□□□□□ -1.35
TNFRSF1A-201ENST00000162749 KRTAP4-3Q9BYR4 195 aa6.62□□□□□ -1.35
TNFRSF1A-201ENST00000162749 DSTQ03001 7570 aaKnown RBP6.59□□□□□ -1.35
TNFRSF1A-201ENST00000162749 SPRR2EP22531 72 aa6.56□□□□□ -1.36
TNFRSF1A-201ENST00000162749 SPRR2BP35325 72 aa6.56□□□□□ -1.36
TNFRSF1A-201ENST00000162749 SPRR2AP35326 72 aa6.56□□□□□ -1.36
TNFRSF1A-201ENST00000162749 KRTAP9-7A8MTY7 169 aa6.44□□□□□ -1.38
TNFRSF1A-201ENST00000162749 LOC100996750A0A140TA64 210 aa6.41□□□□□ -1.38
TNFRSF1A-201ENST00000162749 KRTAP2-3P0C7H8 128 aa6.31□□□□□ -1.4
TNFRSF1A-201ENST00000162749 SPRR2DP22532 72 aa6.31□□□□□ -1.4
TNFRSF1A-201ENST00000162749 KRTAP2-4Q9BYR9 128 aa6.31□□□□□ -1.4
TNFRSF1A-201ENST00000162749 KRTAP2-1Q9BYU5 128 aa6.31□□□□□ -1.4
TNFRSF1A-201ENST00000162749 NEBP20929 6669 aa6.3□□□□□ -1.4
TNFRSF1A-201ENST00000162749 LCE3BQ5TA77 95 aa6.07□□□□□ -1.44
TNFRSF1A-201ENST00000162749 KRTAP5-5Q701N2 237 aaPredicted RBP6.05□□□□□ -1.44
TNFRSF1A-201ENST00000162749 MT1AP04731 61 aa5.91□□□□□ -1.46
TNFRSF1A-201ENST00000162749 KRTAP6-1Q3LI64 71 aa5.9□□□□□ -1.46
TNFRSF1A-201ENST00000162749 SYNE1Q8NF91 8797 aaKnown RBP5.86□□□□□ -1.47
TNFRSF1A-201ENST00000162749 KRTAP5-4Q6L8H1 288 aa5.74□□□□□ -1.49
TNFRSF1A-201ENST00000162749 KRTAP2-2Q9BYT5 123 aa5.7□□□□□ -1.5
TNFRSF1A-201ENST00000162749 KRTAP20-1Q3LI63 56 aa5.68□□□□□ -1.5
TNFRSF1A-201ENST00000162749 KRTAP9-4Q9BYQ2 154 aa5.62□□□□□ -1.51
TNFRSF1A-201ENST00000162749 LCE4AQ5TA78 99 aa5.57□□□□□ -1.52
TNFRSF1A-201ENST00000162749 KRTAP12-4P60329 112 aa5.56□□□□□ -1.52
TNFRSF1A-201ENST00000162749 MT4P47944 62 aa5.51□□□□□ -1.53
TNFRSF1A-201ENST00000162749 KRTAP4-6Q9BYQ5 205 aa5.5□□□□□ -1.53
TNFRSF1A-201ENST00000162749 KRTAP4-9Q9BYQ8 210 aa5.5□□□□□ -1.53
TNFRSF1A-201ENST00000162749 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
TNFRSF1A-201ENST00000162749 KRTAP6-2Q3LI66 62 aa5.42□□□□□ -1.54
TNFRSF1A-201ENST00000162749 LCE1DQ5T752 114 aa5.4□□□□□ -1.54
TNFRSF1A-201ENST00000162749 KRTAP20-2Q3LI61 65 aa5.37□□□□□ -1.55
TNFRSF1A-201ENST00000162749 MT3P25713 68 aa5.35□□□□□ -1.55
TNFRSF1A-201ENST00000162749 LCE3DQ9BYE3 92 aa5.25□□□□□ -1.57
TNFRSF1A-201ENST00000162749 OBSCNQ5VST9 7968 aa5.24□□□□□ -1.57
TNFRSF1A-201ENST00000162749 KRTAP5-2Q701N4 177 aa5.21□□□□□ -1.57
TNFRSF1A-201ENST00000162749 KRTAP5-3Q6L8H2 238 aa5.17□□□□□ -1.58
TNFRSF1A-201ENST00000162749 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
TNFRSF1A-201ENST00000162749 PRM1P04553 51 aa4.89□□□□□ -1.63
TNFRSF1A-201ENST00000162749 AHNAK2Q8IVF2 5795 aa4.75□□□□□ -1.65
TNFRSF1A-201ENST00000162749 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
TNFRSF1A-201ENST00000162749 LCE1EQ5T753 118 aa4.63□□□□□ -1.67
TNFRSF1A-201ENST00000162749 KRTAP5-1Q6L8H4 278 aa4.52□□□□□ -1.69
TNFRSF1A-201ENST00000162749 KRTAP5-8O75690 187 aa4.47□□□□□ -1.69
TNFRSF1A-201ENST00000162749 KRTAP5-10Q6L8G5 202 aa4.44□□□□□ -1.7
TNFRSF1A-201ENST00000162749 MUC5ACP98088 5654 aa4.44□□□□□ -1.7
TNFRSF1A-201ENST00000162749 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
TNFRSF1A-201ENST00000162749 KRTAP4-2Q9BYR5 136 aa4.35□□□□□ -1.71
TNFRSF1A-201ENST00000162749 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
TNFRSF1A-201ENST00000162749 KRTAP5-7Q6L8G8 165 aa4.31□□□□□ -1.72
TNFRSF1A-201ENST00000162749 GPR98Q8WXG9 6306 aa4.21□□□□□ -1.74
TNFRSF1A-201ENST00000162749 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.06□□□□□ -1.76
TNFRSF1A-201ENST00000162749 KRTAP9-9Q9BYP9 154 aa3.98□□□□□ -1.77
TNFRSF1A-201ENST00000162749 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
TNFRSF1A-201ENST00000162749 KRTAP21-2Q3LI59 83 aa3.87□□□□□ -1.79
TNFRSF1A-201ENST00000162749 KRTAP5-11Q6L8G4 156 aa3.82□□□□□ -1.8
TNFRSF1A-201ENST00000162749 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
TNFRSF1A-201ENST00000162749 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.84
TNFRSF1A-201ENST00000162749 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
TNFRSF1A-201ENST00000162749 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
TNFRSF1A-201ENST00000162749 PHGR1C9JFL3 82 aa3.28□□□□□ -1.88
TNFRSF1A-201ENST00000162749 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
TNFRSF1A-201ENST00000162749 KRTAP21-1Q3LI58 79 aa3.11□□□□□ -1.91
TNFRSF1A-201ENST00000162749 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 114.5 ms