RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 SPRR2FQ96RM1 72 aa2.24□□□□□ -2.05
SCN1A-209ENST00000635750 MUC3AQ02505 3323 aa2.24□□□□□ -2.05
SCN1A-209ENST00000635750 KRTAP19-4Q3LI73 84 aa2.24□□□□□ -2.05
SCN1A-209ENST00000635750 FBN1P35555 2871 aaKnown RBP2.22□□□□□ -2.05
SCN1A-209ENST00000635750 KRTAP17-1Q9BYP8 105 aa2.2□□□□□ -2.06
SCN1A-209ENST00000635750 HYDINQ4G0P3 5121 aa2.2□□□□□ -2.06
SCN1A-209ENST00000635750 BSNQ9UPA5 3926 aa2.2□□□□□ -2.06
SCN1A-209ENST00000635750 DNAH1Q9P2D7 4330 aa2.19□□□□□ -2.06
SCN1A-209ENST00000635750 VPS13CQ709C8 3753 aa2.18□□□□□ -2.06
SCN1A-209ENST00000635750 HUWE1Q7Z6Z7 4374 aaKnown RBP2.18□□□□□ -2.06
SCN1A-209ENST00000635750 KRTAP10-4P60372 401 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-209ENST00000635750 OTOGQ6ZRI0 2925 aa2.17□□□□□ -2.06
SCN1A-209ENST00000635750 AKAP9Q99996 3911 aa2.17□□□□□ -2.06
SCN1A-209ENST00000635750 SPRR2EP22531 72 aa2.16□□□□□ -2.06
SCN1A-209ENST00000635750 SPRR2BP35325 72 aa2.16□□□□□ -2.06
SCN1A-209ENST00000635750 SPRR2AP35326 72 aa2.16□□□□□ -2.06
SCN1A-209ENST00000635750 ANK3Q12955 4377 aaKnown RBP2.16□□□□□ -2.06
SCN1A-209ENST00000635750 CSMD3Q7Z407 3707 aa2.15□□□□□ -2.06
SCN1A-209ENST00000635750 MT1HP80294 61 aa2.15□□□□□ -2.07
SCN1A-209ENST00000635750 LCE3CQ5T5A8 94 aa2.13□□□□□ -2.07
SCN1A-209ENST00000635750 KRTAP19-5Q3LI72 72 aa2.12□□□□□ -2.07
SCN1A-209ENST00000635750 RYR2Q92736 4967 aa2.12□□□□□ -2.07
SCN1A-209ENST00000635750 DNHD1Q96M86 4753 aa2.12□□□□□ -2.07
SCN1A-209ENST00000635750 SPRR2GQ9BYE4 73 aa2.11□□□□□ -2.07
SCN1A-209ENST00000635750 SVEP1Q4LDE5 3571 aa2.1□□□□□ -2.07
SCN1A-209ENST00000635750 SPRR2DP22532 72 aa2.1□□□□□ -2.07
SCN1A-209ENST00000635750 KRTAP12-4P60329 112 aa2.1□□□□□ -2.07
SCN1A-209ENST00000635750 CSMD2Q7Z408 3487 aa2.1□□□□□ -2.07
SCN1A-209ENST00000635750 CUBNO60494 3623 aa2.1□□□□□ -2.07
SCN1A-209ENST00000635750 CMYA5Q8N3K9 4069 aa2.08□□□□□ -2.08
SCN1A-209ENST00000635750 MT2AP02795 61 aa2.08□□□□□ -2.08
SCN1A-209ENST00000635750 DNAH7Q8WXX0 4024 aa2.07□□□□□ -2.08
SCN1A-209ENST00000635750 DNAH2Q9P225 4427 aa2.07□□□□□ -2.08
SCN1A-209ENST00000635750 RYR3Q15413 4870 aa2.06□□□□□ -2.08
SCN1A-209ENST00000635750 LCE3BQ5TA77 95 aa2.05□□□□□ -2.08
SCN1A-209ENST00000635750 DNAH3Q8TD57 4116 aa2.04□□□□□ -2.08
SCN1A-209ENST00000635750 KRTAP4-1Q9BYQ7 146 aa2.02□□□□□ -2.09
SCN1A-209ENST00000635750 MT1FP04733 61 aa2.02□□□□□ -2.09
SCN1A-209ENST00000635750 MT3P25713 68 aa1.99□□□□□ -2.09
SCN1A-209ENST00000635750 DNAH6Q9C0G6 4158 aa1.99□□□□□ -2.09
SCN1A-209ENST00000635750 LYSTQ99698 3801 aa1.98□□□□□ -2.09
SCN1A-209ENST00000635750 ANK2Q01484 3957 aa1.98□□□□□ -2.09
SCN1A-209ENST00000635750 EPPK1P58107 5090 aaKnown RBP1.98□□□□□ -2.09
SCN1A-209ENST00000635750 VPS13BQ7Z7G8 4022 aa1.97□□□□□ -2.09
SCN1A-209ENST00000635750 FAT2Q9NYQ8 4349 aa1.96□□□□□ -2.1
SCN1A-209ENST00000635750 MT1GP13640 62 aa1.95□□□□□ -2.1
SCN1A-209ENST00000635750 RNF213Q63HN8 5207 aa1.95□□□□□ -2.1
SCN1A-209ENST00000635750 ZNF469Q96JG9 3925 aaPredicted RBP1.95□□□□□ -2.1
SCN1A-209ENST00000635750 ABCA13Q86UQ4 5058 aa1.94□□□□□ -2.1
SCN1A-209ENST00000635750 LCE3DQ9BYE3 92 aa1.94□□□□□ -2.1
SCN1A-209ENST00000635750 KMT2AQ03164 3969 aa1.94□□□□□ -2.1
SCN1A-209ENST00000635750 FRAS1Q86XX4 4008 aa1.93□□□□□ -2.1
SCN1A-209ENST00000635750 DNAH9Q9NYC9 4486 aa1.93□□□□□ -2.1
SCN1A-209ENST00000635750 DNAH17Q9UFH2 4485 aa1.9□□□□□ -2.11
SCN1A-209ENST00000635750 LCE3EQ5T5B0 92 aa1.89□□□□□ -2.11
SCN1A-209ENST00000635750 KRTAP19-8Q3LI54 63 aa1.89□□□□□ -2.11
SCN1A-209ENST00000635750 DNAH10Q8IVF4 4471 aa1.89□□□□□ -2.11
SCN1A-209ENST00000635750 KMT2CQ8NEZ4 4911 aaKnown RBP1.88□□□□□ -2.11
SCN1A-209ENST00000635750 DYNC2H1Q8NCM8 4307 aaKnown RBP1.87□□□□□ -2.11
SCN1A-209ENST00000635750 DNAH8Q96JB1 4490 aa1.87□□□□□ -2.11
SCN1A-209ENST00000635750 HECTD4Q9Y4D8 3996 aa1.87□□□□□ -2.11
SCN1A-209ENST00000635750 PRKDCP78527 4128 aaKnown RBP1.87□□□□□ -2.11
SCN1A-209ENST00000635750 KRTAP19-1Q8IUB9 90 aa1.86□□□□□ -2.11
SCN1A-209ENST00000635750 SPRR5A0A1B0GTR4 108 aa1.86□□□□□ -2.11
SCN1A-209ENST00000635750 DNAH11Q96DT5 4516 aa1.86□□□□□ -2.11
SCN1A-209ENST00000635750 VPS13DQ5THJ4 4388 aa1.85□□□□□ -2.11
SCN1A-209ENST00000635750 KIAA1109Q2LD37 5005 aa1.85□□□□□ -2.11
SCN1A-209ENST00000635750 MT4P47944 62 aa1.84□□□□□ -2.11
SCN1A-209ENST00000635750 MT1XP80297 61 aa1.84□□□□□ -2.11
SCN1A-209ENST00000635750 FLGP20930 4061 aaPredicted RBP1.84□□□□□ -2.12
SCN1A-209ENST00000635750 KRTAP19-3Q7Z4W3 81 aa1.81□□□□□ -2.12
SCN1A-209ENST00000635750 LCE1BQ5T7P3 118 aa1.79□□□□□ -2.12
SCN1A-209ENST00000635750 LRP1Q07954 4544 aaKnown RBP1.79□□□□□ -2.12
SCN1A-209ENST00000635750 PKHD1L1Q86WI1 4243 aa1.79□□□□□ -2.12
SCN1A-209ENST00000635750 KRTAP4-8A0A0G2JLE6 195 aa1.78□□□□□ -2.12
SCN1A-209ENST00000635750 KRTAP4-8Q9BYQ9 185 aa1.78□□□□□ -2.12
SCN1A-209ENST00000635750 MT1LQ93083 61 aa1.78□□□□□ -2.12
SCN1A-209ENST00000635750 LCE1DQ5T752 114 aa1.78□□□□□ -2.13
SCN1A-209ENST00000635750 DNAH5Q8TE73 4624 aa1.77□□□□□ -2.13
SCN1A-209ENST00000635750 MT1BP07438 61 aa1.76□□□□□ -2.13
SCN1A-209ENST00000635750 KRTAP9-8Q9BYQ0 159 aa1.76□□□□□ -2.13
SCN1A-209ENST00000635750 HMCN2Q8NDA2 5059 aa1.74□□□□□ -2.13
SCN1A-209ENST00000635750 LCE4AQ5TA78 99 aa1.74□□□□□ -2.13
SCN1A-209ENST00000635750 KRTAP9-3Q9BYQ3 159 aa1.73□□□□□ -2.13
SCN1A-209ENST00000635750 PRM1P04553 51 aa1.73□□□□□ -2.13
SCN1A-209ENST00000635750 LRP1BQ9NZR2 4599 aa1.72□□□□□ -2.13
SCN1A-209ENST00000635750 LCE5AQ5TCM9 118 aa1.72□□□□□ -2.13
SCN1A-209ENST00000635750 FAT1Q14517 4588 aa1.71□□□□□ -2.14
SCN1A-209ENST00000635750 PLECQ15149 4684 aaKnown RBP1.71□□□□□ -2.14
SCN1A-209ENST00000635750 KRTAP9-2Q9BYQ4 174 aa1.71□□□□□ -2.14
SCN1A-209ENST00000635750 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
SCN1A-209ENST00000635750 APOBP04114 4563 aaKnown RBP1.7□□□□□ -2.14
SCN1A-209ENST00000635750 PKD1P98161 4303 aa1.7□□□□□ -2.14
SCN1A-209ENST00000635750 MT1EP04732 61 aa1.7□□□□□ -2.14
SCN1A-209ENST00000635750 MUC2Q02817 5179 aa1.69□□□□□ -2.14
SCN1A-209ENST00000635750 STARD9Q9P2P6 4700 aa1.69□□□□□ -2.14
SCN1A-209ENST00000635750 HERC1Q15751 4861 aa1.69□□□□□ -2.14
SCN1A-209ENST00000635750 PKHD1P08F94 4074 aa1.69□□□□□ -2.14
SCN1A-209ENST00000635750 USH2AO75445 5202 aa1.69□□□□□ -2.14
SCN1A-209ENST00000635750 DYNC1H1Q14204 4646 aaKnown RBP1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms