RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 KRTAP10-10P60014 251 aa9.07□□□□□ -0.96
SQSTM1-216ENST00000626660 SNURFQ9Y675 71 aa9.07□□□□□ -0.96
SQSTM1-216ENST00000626660 C20orf197Q8N268 126 aa9.06□□□□□ -0.96
SQSTM1-216ENST00000626660 MT1FP04733 61 aa9.04□□□□□ -0.96
SQSTM1-216ENST00000626660 DMAC1Q96GE9 116 aa9.03□□□□□ -0.96
SQSTM1-216ENST00000626660 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.01□□□□□ -0.97
SQSTM1-216ENST00000626660 NDUFC1O43677 76 aa9.01□□□□□ -0.97
SQSTM1-216ENST00000626660 KRTAP3-3Q9BYR6 98 aa9□□□□□ -0.97
SQSTM1-216ENST00000626660 COX7CP15954 63 aa8.99□□□□□ -0.97
SQSTM1-216ENST00000626660 ACYP2P14621 99 aa8.92□□□□□ -0.98
SQSTM1-216ENST00000626660 ANAPC13Q9BS18 74 aa8.92□□□□□ -0.98
SQSTM1-216ENST00000626660 SPANXA2-OT1Q8N9U9 137 aa8.9□□□□□ -0.98
SQSTM1-216ENST00000626660 KRTAP9-3Q9BYQ3 159 aa8.89□□□□□ -0.99
SQSTM1-216ENST00000626660 H0YAA0 97 aa8.79□□□□□ -1
SQSTM1-216ENST00000626660 CHKB-CPT1BH3BT56 60 aa8.79□□□□□ -1
SQSTM1-216ENST00000626660 SPTSSBQ8NFR3 76 aa8.77□□□□□ -1.01
SQSTM1-216ENST00000626660 USH2AO75445 5202 aa8.76□□□□□ -1.01
SQSTM1-216ENST00000626660 LCE2BO14633 110 aa8.75□□□□□ -1.01
SQSTM1-216ENST00000626660 SSPOA2VEC9 5147 aa8.74□□□□□ -1.01
SQSTM1-216ENST00000626660 H7BZZ5 65 aa8.73□□□□□ -1.01
SQSTM1-216ENST00000626660 ADM2Q7Z4H4 148 aa8.71□□□□□ -1.02
SQSTM1-216ENST00000626660 CYSTM1Q9H1C7 97 aa8.71□□□□□ -1.02
SQSTM1-216ENST00000626660 CCDC179H3BU77 68 aa8.68□□□□□ -1.02
SQSTM1-216ENST00000626660 CRIPTQ9P021 101 aa8.68□□□□□ -1.02
SQSTM1-216ENST00000626660 FCGBPQ9Y6R7 5405 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-216ENST00000626660 KRTAP19-1Q8IUB9 90 aa8.64□□□□□ -1.03
SQSTM1-216ENST00000626660 COA5Q86WW8 74 aa8.62□□□□□ -1.03
SQSTM1-216ENST00000626660 SPRR2GQ9BYE4 73 aa8.61□□□□□ -1.03
SQSTM1-216ENST00000626660 P0C880 135 aa8.55□□□□□ -1.04
SQSTM1-216ENST00000626660 MACF1Q9UPN3 7388 aaKnown RBP8.53□□□□□ -1.04
SQSTM1-216ENST00000626660 KRTAP3-2Q9BYR7 98 aa8.52□□□□□ -1.05
SQSTM1-216ENST00000626660 SYNE2Q8WXH0 6885 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-216ENST00000626660 ATP5EP56381 51 aaPredicted RBP8.5□□□□□ -1.05
SQSTM1-216ENST00000626660 Q5VV11 94 aa8.5□□□□□ -1.05
SQSTM1-216ENST00000626660 KRTAP19-8Q3LI54 63 aa8.48□□□□□ -1.05
SQSTM1-216ENST00000626660 R4GN34 69 aa8.48□□□□□ -1.05
SQSTM1-216ENST00000626660 M0QZ58 72 aa8.43□□□□□ -1.06
SQSTM1-216ENST00000626660 TMEM258P61165 79 aa8.42□□□□□ -1.06
SQSTM1-216ENST00000626660 MT1BP07438 61 aa8.41□□□□□ -1.06
SQSTM1-216ENST00000626660 KRTAP19-6Q3LI70 58 aa8.4□□□□□ -1.06
SQSTM1-216ENST00000626660 SEC61GP60059 68 aa8.37□□□□□ -1.07
SQSTM1-216ENST00000626660 SERP1Q9Y6X1 66 aa8.33□□□□□ -1.08
SQSTM1-216ENST00000626660 LINC01554Q52M75 96 aa8.29□□□□□ -1.08
SQSTM1-216ENST00000626660 KRTAP6-3Q3LI67 103 aa8.27□□□□□ -1.09
SQSTM1-216ENST00000626660 PLAC4Q8WY50 150 aa8.25□□□□□ -1.09
SQSTM1-216ENST00000626660 A6NN06 94 aa8.21□□□□□ -1.1
SQSTM1-216ENST00000626660 A0A1B0GU69 56 aa8.19□□□□□ -1.1
SQSTM1-216ENST00000626660 KRTAP10-5P60370 271 aa8.15□□□□□ -1.1
SQSTM1-216ENST00000626660 A0A1B0GU33 70 aa8.14□□□□□ -1.11
SQSTM1-216ENST00000626660 PCP4P48539 62 aa8.14□□□□□ -1.11
SQSTM1-216ENST00000626660 KRTAP13-4Q3LI77 160 aa8.14□□□□□ -1.11
SQSTM1-216ENST00000626660 PRR15LQ9BU68 103 aa8.11□□□□□ -1.11
SQSTM1-216ENST00000626660 PRO2289Q9P1D8 64 aa8.08□□□□□ -1.12
SQSTM1-216ENST00000626660 LINC01558Q9Y6Z2 57 aa8.07□□□□□ -1.12
SQSTM1-216ENST00000626660 SPATA8Q6RVD6 105 aa8.03□□□□□ -1.12
SQSTM1-216ENST00000626660 NEBP20929 6669 aa8.02□□□□□ -1.13
SQSTM1-216ENST00000626660 A0A0D9SG42 100 aa7.99□□□□□ -1.13
SQSTM1-216ENST00000626660 MT1XP80297 61 aa7.99□□□□□ -1.13
SQSTM1-216ENST00000626660 SMIM26A0A096LP01 95 aa7.94□□□□□ -1.14
SQSTM1-216ENST00000626660 KRTAP20-1Q3LI63 56 aa7.94□□□□□ -1.14
SQSTM1-216ENST00000626660 V9GYY9 64 aa7.91□□□□□ -1.14
SQSTM1-216ENST00000626660 CAMK2N1Q7Z7J9 78 aa7.88□□□□□ -1.15
SQSTM1-216ENST00000626660 MUC12Q9UKN1 5478 aa7.87□□□□□ -1.15
SQSTM1-216ENST00000626660 SPINT4Q6UDR6 99 aa7.86□□□□□ -1.15
SQSTM1-216ENST00000626660 Q1T7F1 81 aa7.83□□□□□ -1.16
SQSTM1-216ENST00000626660 UQCR11O14957 56 aa7.82□□□□□ -1.16
SQSTM1-216ENST00000626660 A8MU10 97 aa7.81□□□□□ -1.16
SQSTM1-216ENST00000626660 RPS28P62857 69 aaKnown RBP7.81□□□□□ -1.16
SQSTM1-216ENST00000626660 KRTAP12-1P59990 96 aa7.8□□□□□ -1.16
SQSTM1-216ENST00000626660 PSPHP1O15172 72 aa7.76□□□□□ -1.17
SQSTM1-216ENST00000626660 KRTAP12-2P59991 146 aa7.75□□□□□ -1.17
SQSTM1-216ENST00000626660 MIR22HGQ0VDD5 57 aa7.67□□□□□ -1.18
SQSTM1-216ENST00000626660 KRTAP5-9P26371 169 aa7.64□□□□□ -1.19
SQSTM1-216ENST00000626660 KRTAP10-7P60409 375 aaPredicted RBP7.64□□□□□ -1.19
SQSTM1-216ENST00000626660 MDN1Q9NU22 5596 aa7.62□□□□□ -1.19
SQSTM1-216ENST00000626660 KRTAP10-12P60413 245 aa7.6□□□□□ -1.19
SQSTM1-216ENST00000626660 KRTAP2-3P0C7H8 128 aa7.59□□□□□ -1.19
SQSTM1-216ENST00000626660 KRTAP2-4Q9BYR9 128 aa7.59□□□□□ -1.19
SQSTM1-216ENST00000626660 KMT2DO14686 5537 aa7.56□□□□□ -1.2
SQSTM1-216ENST00000626660 A6NED7 52 aa7.55□□□□□ -1.2
SQSTM1-216ENST00000626660 KRTAP8-1Q8IUC2 63 aa7.55□□□□□ -1.2
SQSTM1-216ENST00000626660 K7ERS5 55 aa7.51□□□□□ -1.21
SQSTM1-216ENST00000626660 KRTAP4-8A0A0G2JLE6 195 aa7.49□□□□□ -1.21
SQSTM1-216ENST00000626660 KRTAP4-8Q9BYQ9 185 aa7.49□□□□□ -1.21
SQSTM1-216ENST00000626660 SPRR2FQ96RM1 72 aa7.42□□□□□ -1.22
SQSTM1-216ENST00000626660 C10orf95Q9H7T3 257 aa7.42□□□□□ -1.22
SQSTM1-216ENST00000626660 SPRR2EP22531 72 aa7.41□□□□□ -1.22
SQSTM1-216ENST00000626660 SPRR2BP35325 72 aa7.41□□□□□ -1.22
SQSTM1-216ENST00000626660 SPRR2AP35326 72 aa7.41□□□□□ -1.22
SQSTM1-216ENST00000626660 TNP1P09430 55 aa7.37□□□□□ -1.23
SQSTM1-216ENST00000626660 KRTAP2-2Q9BYT5 123 aa7.32□□□□□ -1.24
SQSTM1-216ENST00000626660 KRTAP2-1Q9BYU5 128 aa7.32□□□□□ -1.24
SQSTM1-216ENST00000626660 CDC42SE1Q9NRR8 79 aa7.28□□□□□ -1.24
SQSTM1-216ENST00000626660 SPRR2DP22532 72 aa7.18□□□□□ -1.26
SQSTM1-216ENST00000626660 KRTAP25-1Q3LHN0 102 aa7.17□□□□□ -1.26
SQSTM1-216ENST00000626660 LCE1AQ5T7P2 110 aa7.16□□□□□ -1.26
SQSTM1-216ENST00000626660 LCE3AQ5TA76 89 aa7.14□□□□□ -1.27
SQSTM1-216ENST00000626660 KRTAP19-7Q3SYF9 63 aa7.13□□□□□ -1.27
SQSTM1-216ENST00000626660 KRTAP19-5Q3LI72 72 aa7.09□□□□□ -1.27
SQSTM1-216ENST00000626660 MT1EP04732 61 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms