RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 SSBP3-AS1Q7Z2R9 100 aa6.6□□□□□ -1.35
LINC00538-201ENST00000626109 PCOTHQ58A44 107 aa6.59□□□□□ -1.35
LINC00538-201ENST00000626109 COA5Q86WW8 74 aa6.59□□□□□ -1.35
LINC00538-201ENST00000626109 LINC01558Q9Y6Z2 57 aa6.58□□□□□ -1.36
LINC00538-201ENST00000626109 PKHD1L1Q86WI1 4243 aa6.56□□□□□ -1.36
LINC00538-201ENST00000626109 KRTAP13-2Q52LG2 175 aa6.54□□□□□ -1.36
LINC00538-201ENST00000626109 FLG2Q5D862 2391 aaPredicted RBP6.54□□□□□ -1.36
LINC00538-201ENST00000626109 SPINK7P58062 85 aa6.53□□□□□ -1.36
LINC00538-201ENST00000626109 KRTAP10-8P60410 259 aa6.51□□□□□ -1.37
LINC00538-201ENST00000626109 MT1HL1P0DM35 61 aa6.49□□□□□ -1.37
LINC00538-201ENST00000626109 ABCA13Q86UQ4 5058 aa6.49□□□□□ -1.37
LINC00538-201ENST00000626109 KRTAP15-1Q3LI76 137 aa6.48□□□□□ -1.37
LINC00538-201ENST00000626109 LINC00304Q8N9R0 145 aa6.47□□□□□ -1.37
LINC00538-201ENST00000626109 HRES1P13985 223 aa6.46□□□□□ -1.38
LINC00538-201ENST00000626109 ACYP2P14621 99 aa6.46□□□□□ -1.38
LINC00538-201ENST00000626109 LRP1Q07954 4544 aaKnown RBP6.45□□□□□ -1.38
LINC00538-201ENST00000626109 KRTAP13-3Q3SY46 172 aa6.45□□□□□ -1.38
LINC00538-201ENST00000626109 FAT3Q8TDW7 4589 aa6.45□□□□□ -1.38
LINC00538-201ENST00000626109 SPINT4Q6UDR6 99 aa6.44□□□□□ -1.38
LINC00538-201ENST00000626109 R4GN34 69 aa6.44□□□□□ -1.38
LINC00538-201ENST00000626109 MYCBP2O75592 4640 aa6.44□□□□□ -1.38
LINC00538-201ENST00000626109 SPINK1P00995 79 aa6.41□□□□□ -1.38
LINC00538-201ENST00000626109 UQCR11O14957 56 aa6.4□□□□□ -1.39
LINC00538-201ENST00000626109 LOC100996750A0A140TA64 210 aa6.38□□□□□ -1.39
LINC00538-201ENST00000626109 RPS29P62273 56 aaKnown RBP6.38□□□□□ -1.39
LINC00538-201ENST00000626109 KRTAP4-6Q9BYQ5 205 aa6.38□□□□□ -1.39
LINC00538-201ENST00000626109 PCLOQ9Y6V0 5065 aa6.36□□□□□ -1.39
LINC00538-201ENST00000626109 IGKV2-30P06310 120 aa6.36□□□□□ -1.39
LINC00538-201ENST00000626109 PRO2289Q9P1D8 64 aa6.36□□□□□ -1.39
LINC00538-201ENST00000626109 TNXBP22105 4242 aa6.36□□□□□ -1.39
LINC00538-201ENST00000626109 DMBT1Q9UGM3 2413 aaPredicted RBP6.34□□□□□ -1.39
LINC00538-201ENST00000626109 SPATA8Q6RVD6 105 aa6.32□□□□□ -1.4
LINC00538-201ENST00000626109 IGKV2D-30A0A075B6S6 120 aa6.26□□□□□ -1.41
LINC00538-201ENST00000626109 A0A1B0GU69 56 aa6.25□□□□□ -1.41
LINC00538-201ENST00000626109 TPRXLQ17RH7 258 aa6.19□□□□□ -1.42
LINC00538-201ENST00000626109 HERC1Q15751 4861 aa6.13□□□□□ -1.43
LINC00538-201ENST00000626109 C9orf92A6NGG3 77 aa6.11□□□□□ -1.43
LINC00538-201ENST00000626109 XP32Q5T750 250 aa6.05□□□□□ -1.44
LINC00538-201ENST00000626109 HMCN2Q8NDA2 5059 aa6.05□□□□□ -1.44
LINC00538-201ENST00000626109 LPAP08519 4548 aa5.99□□□□□ -1.45
LINC00538-201ENST00000626109 RPL37P61927 97 aaKnown RBP5.98□□□□□ -1.45
LINC00538-201ENST00000626109 LRP2P98164 4655 aa5.94□□□□□ -1.46
LINC00538-201ENST00000626109 COX6B2Q6YFQ2 88 aa5.91□□□□□ -1.46
LINC00538-201ENST00000626109 H1FX-AS1Q4G0G2 97 aa5.87□□□□□ -1.47
LINC00538-201ENST00000626109 H0YAA0 97 aa5.84□□□□□ -1.47
LINC00538-201ENST00000626109 MUC17Q685J3 4493 aa5.83□□□□□ -1.48
LINC00538-201ENST00000626109 KRTAP4-1Q9BYQ7 146 aa5.79□□□□□ -1.48
LINC00538-201ENST00000626109 UBR4Q5T4S7 5183 aa5.79□□□□□ -1.48
LINC00538-201ENST00000626109 INE1O15225 51 aa5.78□□□□□ -1.48
LINC00538-201ENST00000626109 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
LINC00538-201ENST00000626109 S4R3F8 94 aa5.72□□□□□ -1.49
LINC00538-201ENST00000626109 CRIPTQ9P021 101 aa5.7□□□□□ -1.5
LINC00538-201ENST00000626109 RNF213Q63HN8 5207 aa5.69□□□□□ -1.5
LINC00538-201ENST00000626109 PLAC4Q8WY50 150 aa5.65□□□□□ -1.51
LINC00538-201ENST00000626109 KRTAP10-6P60371 365 aaPredicted RBP5.64□□□□□ -1.51
LINC00538-201ENST00000626109 MUC2Q02817 5179 aa5.63□□□□□ -1.51
LINC00538-201ENST00000626109 KRTAP19-2Q3LHN2 52 aa5.6□□□□□ -1.51
LINC00538-201ENST00000626109 KRTAP9-2Q9BYQ4 174 aa5.58□□□□□ -1.52
LINC00538-201ENST00000626109 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.56□□□□□ -1.52
LINC00538-201ENST00000626109 A0A0D9SG42 100 aa5.55□□□□□ -1.52
LINC00538-201ENST00000626109 KRTAP9-6A0A140TA67 174 aa5.54□□□□□ -1.52
LINC00538-201ENST00000626109 KRTAP13-4Q3LI77 160 aa5.54□□□□□ -1.52
LINC00538-201ENST00000626109 KRTAP19-4Q3LI73 84 aa5.53□□□□□ -1.52
LINC00538-201ENST00000626109 M0QZ58 72 aa5.49□□□□□ -1.53
LINC00538-201ENST00000626109 MT1HP80294 61 aa5.49□□□□□ -1.53
LINC00538-201ENST00000626109 FAT4Q6V0I7 4981 aa5.48□□□□□ -1.53
LINC00538-201ENST00000626109 LCE5AQ5TCM9 118 aa5.47□□□□□ -1.53
LINC00538-201ENST00000626109 M0R2T5 61 aa5.46□□□□□ -1.54
LINC00538-201ENST00000626109 LCE3BQ5TA77 95 aa5.46□□□□□ -1.54
LINC00538-201ENST00000626109 KRTAP12-2P59991 146 aa5.4□□□□□ -1.55
LINC00538-201ENST00000626109 PP632Q6XCG6 107 aa5.4□□□□□ -1.55
LINC00538-201ENST00000626109 KRTAP12-1P59990 96 aa5.38□□□□□ -1.55
LINC00538-201ENST00000626109 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
LINC00538-201ENST00000626109 KRTAP4-12Q9BQ66 201 aa5.37□□□□□ -1.55
LINC00538-201ENST00000626109 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
LINC00538-201ENST00000626109 KRTAP9-9Q9BYP9 154 aa5.29□□□□□ -1.56
LINC00538-201ENST00000626109 KRTAP9-4Q9BYQ2 154 aa5.29□□□□□ -1.56
LINC00538-201ENST00000626109 C10orf95Q9H7T3 257 aa5.27□□□□□ -1.57
LINC00538-201ENST00000626109 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
LINC00538-201ENST00000626109 MT2AP02795 61 aa5.21□□□□□ -1.57
LINC00538-201ENST00000626109 KRTAP2-2Q9BYT5 123 aa5.19□□□□□ -1.58
LINC00538-201ENST00000626109 KRTAP10-10P60014 251 aa5.18□□□□□ -1.58
LINC00538-201ENST00000626109 MT1FP04733 61 aa5.17□□□□□ -1.58
LINC00538-201ENST00000626109 KRTAP4-7Q9BYR0 210 aa5.17□□□□□ -1.58
LINC00538-201ENST00000626109 KRTAP19-1Q8IUB9 90 aa5.15□□□□□ -1.58
LINC00538-201ENST00000626109 LCE1DQ5T752 114 aa5.12□□□□□ -1.59
LINC00538-201ENST00000626109 KRTAP9-3Q9BYQ3 159 aa5.06□□□□□ -1.6
LINC00538-201ENST00000626109 KRTAP4-9Q9BYQ8 210 aa5□□□□□ -1.61
LINC00538-201ENST00000626109 SPRR2GQ9BYE4 73 aa4.98□□□□□ -1.61
LINC00538-201ENST00000626109 LCE1FQ5T754 118 aa4.96□□□□□ -1.62
LINC00538-201ENST00000626109 KRTAP4-2Q9BYR5 136 aa4.91□□□□□ -1.62
LINC00538-201ENST00000626109 KRTAP19-8Q3LI54 63 aa4.89□□□□□ -1.63
LINC00538-201ENST00000626109 TNP1P09430 55 aa4.88□□□□□ -1.63
LINC00538-201ENST00000626109 KRTAP9-7A8MTY7 169 aa4.85□□□□□ -1.63
LINC00538-201ENST00000626109 MT1BP07438 61 aa4.84□□□□□ -1.64
LINC00538-201ENST00000626109 CRCT1Q9UGL9 99 aa4.8□□□□□ -1.64
LINC00538-201ENST00000626109 USH2AO75445 5202 aa4.8□□□□□ -1.64
LINC00538-201ENST00000626109 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
LINC00538-201ENST00000626109 MT3P25713 68 aa4.76□□□□□ -1.65
LINC00538-201ENST00000626109 LCE4AQ5TA78 99 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms