RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 PRAC1Q96KF2 57 aa9.62□□□□□ -0.87
PCF11-207ENST00000624931 DMBT1Q9UGM3 2413 aaPredicted RBP9.59□□□□□ -0.87
PCF11-207ENST00000624931 LINC01554Q52M75 96 aa9.58□□□□□ -0.88
PCF11-207ENST00000624931 ADM2Q7Z4H4 148 aa9.56□□□□□ -0.88
PCF11-207ENST00000624931 A8MUU9 505 aa9.51□□□□□ -0.89
PCF11-207ENST00000624931 C20orf166-AS1Q96NR2 134 aa9.5□□□□□ -0.89
PCF11-207ENST00000624931 C9orf92A6NGG3 77 aa9.48□□□□□ -0.89
PCF11-207ENST00000624931 J3QL48 77 aa9.46□□□□□ -0.89
PCF11-207ENST00000624931 A0A1B0GU33 70 aa9.41□□□□□ -0.9
PCF11-207ENST00000624931 CSAG1Q6PB30 78 aa9.41□□□□□ -0.9
PCF11-207ENST00000624931 PCLOQ9Y6V0 5065 aa9.39□□□□□ -0.91
PCF11-207ENST00000624931 H0YAA0 97 aa9.37□□□□□ -0.91
PCF11-207ENST00000624931 H1FX-AS1Q4G0G2 97 aa9.37□□□□□ -0.91
PCF11-207ENST00000624931 KRTAP3-1Q9BYR8 98 aa9.33□□□□□ -0.92
PCF11-207ENST00000624931 K7ERS5 55 aa9.3□□□□□ -0.92
PCF11-207ENST00000624931 COX6B2Q6YFQ2 88 aa9.28□□□□□ -0.92
PCF11-207ENST00000624931 XP32Q5T750 250 aa9.25□□□□□ -0.93
PCF11-207ENST00000624931 KRTAP25-1Q3LHN0 102 aa9.24□□□□□ -0.93
PCF11-207ENST00000624931 TPRXLQ17RH7 258 aa9.19□□□□□ -0.94
PCF11-207ENST00000624931 LPAP08519 4548 aa9.18□□□□□ -0.94
PCF11-207ENST00000624931 RPL37P61927 97 aaKnown RBP9.15□□□□□ -0.94
PCF11-207ENST00000624931 HERC1Q15751 4861 aa9.1□□□□□ -0.95
PCF11-207ENST00000624931 LRP2P98164 4655 aa9.06□□□□□ -0.96
PCF11-207ENST00000624931 ROMO1P60602 79 aa9.02□□□□□ -0.96
PCF11-207ENST00000624931 HMCN2Q8NDA2 5059 aa8.98□□□□□ -0.97
PCF11-207ENST00000624931 KRTAP10-6P60371 365 aaPredicted RBP8.95□□□□□ -0.98
PCF11-207ENST00000624931 KRTAP3-3Q9BYR6 98 aa8.93□□□□□ -0.98
PCF11-207ENST00000624931 S4R3F8 94 aa8.91□□□□□ -0.98
PCF11-207ENST00000624931 H3BS24 57 aa8.87□□□□□ -0.99
PCF11-207ENST00000624931 SEC61BP60468 96 aaKnown RBP8.87□□□□□ -0.99
PCF11-207ENST00000624931 KRTAP3-2Q9BYR7 98 aa8.87□□□□□ -0.99
PCF11-207ENST00000624931 MUC17Q685J3 4493 aa8.84□□□□□ -0.99
PCF11-207ENST00000624931 KRTAP4-1Q9BYQ7 146 aa8.84□□□□□ -0.99
PCF11-207ENST00000624931 KRTAP13-4Q3LI77 160 aa8.8□□□□□ -1
PCF11-207ENST00000624931 A0A0D9SG42 100 aa8.76□□□□□ -1.01
PCF11-207ENST00000624931 CRIPTQ9P021 101 aa8.76□□□□□ -1.01
PCF11-207ENST00000624931 P0C880 135 aa8.68□□□□□ -1.02
PCF11-207ENST00000624931 M0QZ58 72 aa8.65□□□□□ -1.03
PCF11-207ENST00000624931 SPINT4Q6UDR6 99 aa8.62□□□□□ -1.03
PCF11-207ENST00000624931 UBR4Q5T4S7 5183 aa8.6□□□□□ -1.03
PCF11-207ENST00000624931 KRTAP12-2P59991 146 aa8.57□□□□□ -1.04
PCF11-207ENST00000624931 KRTAP12-1P59990 96 aa8.57□□□□□ -1.04
PCF11-207ENST00000624931 MUC2Q02817 5179 aa8.55□□□□□ -1.04
PCF11-207ENST00000624931 KRTAP19-2Q3LHN2 52 aa8.54□□□□□ -1.04
PCF11-207ENST00000624931 RNF213Q63HN8 5207 aa8.52□□□□□ -1.05
PCF11-207ENST00000624931 C10orf95Q9H7T3 257 aa8.48□□□□□ -1.05
PCF11-207ENST00000624931 KRTAP15-1Q3LI76 137 aa8.44□□□□□ -1.06
PCF11-207ENST00000624931 LCE2CQ5TA81 110 aa8.37□□□□□ -1.07
PCF11-207ENST00000624931 FLGP20930 4061 aaPredicted RBP8.27□□□□□ -1.09
PCF11-207ENST00000624931 R4GN34 69 aa8.26□□□□□ -1.09
PCF11-207ENST00000624931 FAT4Q6V0I7 4981 aa8.24□□□□□ -1.09
PCF11-207ENST00000624931 NDUFAF8A1L188 74 aa8.21□□□□□ -1.09
PCF11-207ENST00000624931 MT1HP80294 61 aa8.2□□□□□ -1.1
PCF11-207ENST00000624931 M0R2T5 61 aa8.09□□□□□ -1.11
PCF11-207ENST00000624931 PP632Q6XCG6 107 aa8.06□□□□□ -1.12
PCF11-207ENST00000624931 PLAC4Q8WY50 150 aa8.01□□□□□ -1.13
PCF11-207ENST00000624931 LORP23490 312 aaPredicted RBP7.95□□□□□ -1.14
PCF11-207ENST00000624931 LCE2AQ5TA79 106 aaPredicted RBP7.91□□□□□ -1.14
PCF11-207ENST00000624931 KRTAP9-8Q9BYQ0 159 aa7.88□□□□□ -1.15
PCF11-207ENST00000624931 MT2AP02795 61 aa7.87□□□□□ -1.15
PCF11-207ENST00000624931 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
PCF11-207ENST00000624931 A0A0A0MQY5 61 aa7.86□□□□□ -1.15
PCF11-207ENST00000624931 MT1FP04733 61 aa7.85□□□□□ -1.15
PCF11-207ENST00000624931 KRTAP23-1A1A580 65 aa7.81□□□□□ -1.16
PCF11-207ENST00000624931 KRTAP10-10P60014 251 aa7.78□□□□□ -1.16
PCF11-207ENST00000624931 LUZP6Q538Z0 58 aa7.78□□□□□ -1.16
PCF11-207ENST00000624931 TNP1P09430 55 aa7.68□□□□□ -1.18
PCF11-207ENST00000624931 KRTAP19-1Q8IUB9 90 aa7.66□□□□□ -1.18
PCF11-207ENST00000624931 SPRR2GQ9BYE4 73 aa7.6□□□□□ -1.19
PCF11-207ENST00000624931 KRTAP9-3Q9BYQ3 159 aa7.6□□□□□ -1.19
PCF11-207ENST00000624931 SPRR5A0A1B0GTR4 108 aa7.48□□□□□ -1.21
PCF11-207ENST00000624931 LCE2BO14633 110 aa7.43□□□□□ -1.22
PCF11-207ENST00000624931 KRTAP19-8Q3LI54 63 aa7.43□□□□□ -1.22
PCF11-207ENST00000624931 MT1BP07438 61 aa7.4□□□□□ -1.23
PCF11-207ENST00000624931 KRTAP9-2Q9BYQ4 174 aa7.27□□□□□ -1.25
PCF11-207ENST00000624931 USH2AO75445 5202 aa7.23□□□□□ -1.25
PCF11-207ENST00000624931 LCE2DQ5TA82 110 aaPredicted RBP7.18□□□□□ -1.26
PCF11-207ENST00000624931 MT1XP80297 61 aa7.13□□□□□ -1.27
PCF11-207ENST00000624931 KRTAP10-5P60370 271 aa7.12□□□□□ -1.27
PCF11-207ENST00000624931 LCE3AQ5TA76 89 aa7.1□□□□□ -1.27
PCF11-207ENST00000624931 KRTAP8-1Q8IUC2 63 aa7.06□□□□□ -1.28
PCF11-207ENST00000624931 FSIP2Q5CZC0 6907 aa7.04□□□□□ -1.28
PCF11-207ENST00000624931 KRTAP9-6A0A140TA67 174 aa7.04□□□□□ -1.28
PCF11-207ENST00000624931 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
PCF11-207ENST00000624931 PRO2289Q9P1D8 64 aa6.95□□□□□ -1.3
PCF11-207ENST00000624931 KRTAP19-6Q3LI70 58 aa6.93□□□□□ -1.3
PCF11-207ENST00000624931 CRCT1Q9UGL9 99 aa6.91□□□□□ -1.3
PCF11-207ENST00000624931 INE1O15225 51 aa6.87□□□□□ -1.31
PCF11-207ENST00000624931 KRTAP10-7P60409 375 aaPredicted RBP6.87□□□□□ -1.31
PCF11-207ENST00000624931 KRTAP12-3P60328 96 aa6.82□□□□□ -1.32
PCF11-207ENST00000624931 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
PCF11-207ENST00000624931 FCGBPQ9Y6R7 5405 aaPredicted RBP6.71□□□□□ -1.34
PCF11-207ENST00000624931 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
PCF11-207ENST00000624931 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
PCF11-207ENST00000624931 KMT2DO14686 5537 aa6.58□□□□□ -1.36
PCF11-207ENST00000624931 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
PCF11-207ENST00000624931 KRTAP19-5Q3LI72 72 aa6.45□□□□□ -1.38
PCF11-207ENST00000624931 LOC100996750A0A140TA64 210 aa6.42□□□□□ -1.38
PCF11-207ENST00000624931 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.42□□□□□ -1.38
PCF11-207ENST00000624931 KRTAP4-6Q9BYQ5 205 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms