RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TNXBP22105 4242 aa6.7□□□□□ -1.34
CCDC88A-214ENST00000621814 KRTAP17-1Q9BYP8 105 aa6.7□□□□□ -1.34
CCDC88A-214ENST00000621814 XP32Q5T750 250 aa6.69□□□□□ -1.34
CCDC88A-214ENST00000621814 RYR3Q15413 4870 aa6.69□□□□□ -1.34
CCDC88A-214ENST00000621814 RPL37P61927 97 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-214ENST00000621814 KIAA1109Q2LD37 5005 aa6.65□□□□□ -1.35
CCDC88A-214ENST00000621814 A0A0D9SG42 100 aa6.64□□□□□ -1.35
CCDC88A-214ENST00000621814 CRIPTQ9P021 101 aa6.64□□□□□ -1.35
CCDC88A-214ENST00000621814 LINC01554Q52M75 96 aa6.63□□□□□ -1.35
CCDC88A-214ENST00000621814 KRTAP3-3Q9BYR6 98 aa6.61□□□□□ -1.35
CCDC88A-214ENST00000621814 S4R3F8 94 aa6.6□□□□□ -1.35
CCDC88A-214ENST00000621814 LPAP08519 4548 aa6.6□□□□□ -1.35
CCDC88A-214ENST00000621814 K7ERS5 55 aa6.58□□□□□ -1.36
CCDC88A-214ENST00000621814 RYR1P21817 5038 aa6.58□□□□□ -1.36
CCDC88A-214ENST00000621814 KRTAP10-6P60371 365 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-214ENST00000621814 MT1HL1P0DM35 61 aa6.55□□□□□ -1.36
CCDC88A-214ENST00000621814 KRTAP13-4Q3LI77 160 aa6.55□□□□□ -1.36
CCDC88A-214ENST00000621814 P0C880 135 aa6.52□□□□□ -1.37
CCDC88A-214ENST00000621814 LRP2P98164 4655 aa6.51□□□□□ -1.37
CCDC88A-214ENST00000621814 KRTAP3-2Q9BYR7 98 aa6.5□□□□□ -1.37
CCDC88A-214ENST00000621814 KRTAP25-1Q3LHN0 102 aa6.47□□□□□ -1.37
CCDC88A-214ENST00000621814 EPPK1P58107 5090 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-214ENST00000621814 ABCA13Q86UQ4 5058 aa6.44□□□□□ -1.38
CCDC88A-214ENST00000621814 KRTAP4-5Q9BYR2 181 aa6.41□□□□□ -1.38
CCDC88A-214ENST00000621814 ROMO1P60602 79 aa6.4□□□□□ -1.38
CCDC88A-214ENST00000621814 SPINT4Q6UDR6 99 aa6.4□□□□□ -1.39
CCDC88A-214ENST00000621814 TPRXLQ17RH7 258 aa6.36□□□□□ -1.39
CCDC88A-214ENST00000621814 KRTAP12-2P59991 146 aa6.34□□□□□ -1.39
CCDC88A-214ENST00000621814 C10orf95Q9H7T3 257 aa6.32□□□□□ -1.4
CCDC88A-214ENST00000621814 H3BS24 57 aa6.25□□□□□ -1.41
CCDC88A-214ENST00000621814 KRTAP12-1P59990 96 aa6.25□□□□□ -1.41
CCDC88A-214ENST00000621814 J3QL48 77 aa6.24□□□□□ -1.41
CCDC88A-214ENST00000621814 M0QZ58 72 aa6.22□□□□□ -1.41
CCDC88A-214ENST00000621814 R4GN34 69 aa6.19□□□□□ -1.42
CCDC88A-214ENST00000621814 SEC61BP60468 96 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-214ENST00000621814 KRTAP4-1Q9BYQ7 146 aa6.16□□□□□ -1.42
CCDC88A-214ENST00000621814 MUC2Q02817 5179 aa6.16□□□□□ -1.42
CCDC88A-214ENST00000621814 LORP23490 312 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-214ENST00000621814 HERC2O95714 4834 aa6.09□□□□□ -1.43
CCDC88A-214ENST00000621814 MUC17Q685J3 4493 aa6.07□□□□□ -1.44
CCDC88A-214ENST00000621814 CAMK2N1Q7Z7J9 78 aa5.91□□□□□ -1.46
CCDC88A-214ENST00000621814 KRTAP19-2Q3LHN2 52 aa5.9□□□□□ -1.46
CCDC88A-214ENST00000621814 HERC1Q15751 4861 aa5.9□□□□□ -1.47
CCDC88A-214ENST00000621814 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
CCDC88A-214ENST00000621814 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
CCDC88A-214ENST00000621814 NDUFAF8A1L188 74 aa5.85□□□□□ -1.47
CCDC88A-214ENST00000621814 PCLOQ9Y6V0 5065 aa5.82□□□□□ -1.48
CCDC88A-214ENST00000621814 FAT4Q6V0I7 4981 aa5.82□□□□□ -1.48
CCDC88A-214ENST00000621814 FLGP20930 4061 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-214ENST00000621814 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-214ENST00000621814 RNF213Q63HN8 5207 aa5.71□□□□□ -1.5
CCDC88A-214ENST00000621814 M0R2T5 61 aa5.71□□□□□ -1.5
CCDC88A-214ENST00000621814 PLAC4Q8WY50 150 aa5.7□□□□□ -1.5
CCDC88A-214ENST00000621814 HMCN2Q8NDA2 5059 aa5.69□□□□□ -1.5
CCDC88A-214ENST00000621814 UBR4Q5T4S7 5183 aa5.61□□□□□ -1.51
CCDC88A-214ENST00000621814 LCE2CQ5TA81 110 aa5.61□□□□□ -1.51
CCDC88A-214ENST00000621814 A0A0A0MQY5 61 aa5.6□□□□□ -1.51
CCDC88A-214ENST00000621814 TNP1P09430 55 aa5.59□□□□□ -1.51
CCDC88A-214ENST00000621814 PP632Q6XCG6 107 aa5.58□□□□□ -1.52
CCDC88A-214ENST00000621814 KRTAP10-10P60014 251 aa5.51□□□□□ -1.53
CCDC88A-214ENST00000621814 MT1HP80294 61 aa5.5□□□□□ -1.53
CCDC88A-214ENST00000621814 KRTAP19-1Q8IUB9 90 aa5.49□□□□□ -1.53
CCDC88A-214ENST00000621814 LUZP6Q538Z0 58 aa5.46□□□□□ -1.54
CCDC88A-214ENST00000621814 SPRR2GQ9BYE4 73 aa5.46□□□□□ -1.54
CCDC88A-214ENST00000621814 MT1FP04733 61 aa5.43□□□□□ -1.54
CCDC88A-214ENST00000621814 MT2AP02795 61 aa5.41□□□□□ -1.54
CCDC88A-214ENST00000621814 KRTAP9-8Q9BYQ0 159 aa5.34□□□□□ -1.55
CCDC88A-214ENST00000621814 LCE3AQ5TA76 89 aa5.33□□□□□ -1.56
CCDC88A-214ENST00000621814 KRTAP23-1A1A580 65 aa5.29□□□□□ -1.56
CCDC88A-214ENST00000621814 MT1BP07438 61 aa5.2□□□□□ -1.58
CCDC88A-214ENST00000621814 KRTAP10-5P60370 271 aa5.18□□□□□ -1.58
CCDC88A-214ENST00000621814 KRTAP19-8Q3LI54 63 aa5.18□□□□□ -1.58
CCDC88A-214ENST00000621814 MT1XP80297 61 aa5.17□□□□□ -1.58
CCDC88A-214ENST00000621814 SPRR5A0A1B0GTR4 108 aa5.14□□□□□ -1.59
CCDC88A-214ENST00000621814 USH2AO75445 5202 aa5.11□□□□□ -1.59
CCDC88A-214ENST00000621814 KRTAP9-3Q9BYQ3 159 aa5.1□□□□□ -1.59
CCDC88A-214ENST00000621814 KRTAP10-12P60413 245 aa5.1□□□□□ -1.59
CCDC88A-214ENST00000621814 KRTAP10-7P60409 375 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-214ENST00000621814 KRTAP8-1Q8IUC2 63 aa5.06□□□□□ -1.6
CCDC88A-214ENST00000621814 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
CCDC88A-214ENST00000621814 KMT2DO14686 5537 aa5□□□□□ -1.61
CCDC88A-214ENST00000621814 PRO2289Q9P1D8 64 aa4.99□□□□□ -1.61
CCDC88A-214ENST00000621814 LCE2BO14633 110 aa4.96□□□□□ -1.61
CCDC88A-214ENST00000621814 KRTAP19-5Q3LI72 72 aa4.87□□□□□ -1.63
CCDC88A-214ENST00000621814 KRTAP4-8A0A0G2JLE6 195 aa4.86□□□□□ -1.63
CCDC88A-214ENST00000621814 KRTAP4-8Q9BYQ9 185 aa4.86□□□□□ -1.63
CCDC88A-214ENST00000621814 FSIP2Q5CZC0 6907 aa4.8□□□□□ -1.64
CCDC88A-214ENST00000621814 LCE2AQ5TA79 106 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-214ENST00000621814 LOC100996750A0A140TA64 210 aa4.74□□□□□ -1.65
CCDC88A-214ENST00000621814 KRTAP4-6Q9BYQ5 205 aa4.74□□□□□ -1.65
CCDC88A-214ENST00000621814 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
CCDC88A-214ENST00000621814 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
CCDC88A-214ENST00000621814 KRTAP19-7Q3SYF9 63 aa4.6□□□□□ -1.67
CCDC88A-214ENST00000621814 KRTAP9-6A8MVA2 160 aa4.59□□□□□ -1.68
CCDC88A-214ENST00000621814 SSPOA2VEC9 5147 aa4.55□□□□□ -1.68
CCDC88A-214ENST00000621814 INE1O15225 51 aa4.52□□□□□ -1.69
CCDC88A-214ENST00000621814 MT1EP04732 61 aa4.46□□□□□ -1.7
CCDC88A-214ENST00000621814 MT1LQ93083 61 aa4.46□□□□□ -1.7
CCDC88A-214ENST00000621814 MUC12Q9UKN1 5478 aa4.39□□□□□ -1.71
CCDC88A-214ENST00000621814 FCGBPQ9Y6R7 5405 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms