RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 M0R2T5 61 aa4.8□□□□□ -1.64
GGA3-222ENST00000621217 DNAH2Q9P225 4427 aa4.79□□□□□ -1.64
GGA3-222ENST00000621217 XP32Q5T750 250 aa4.79□□□□□ -1.64
GGA3-222ENST00000621217 KIAA1109Q2LD37 5005 aa4.78□□□□□ -1.64
GGA3-222ENST00000621217 DYNC1H1Q14204 4646 aaKnown RBP4.78□□□□□ -1.64
GGA3-222ENST00000621217 P0C880 135 aa4.77□□□□□ -1.65
GGA3-222ENST00000621217 KRTAP10-8P60410 259 aa4.76□□□□□ -1.65
GGA3-222ENST00000621217 KRTAP4-5Q9BYR2 181 aa4.75□□□□□ -1.65
GGA3-222ENST00000621217 MYCBP2O75592 4640 aa4.73□□□□□ -1.65
GGA3-222ENST00000621217 HECTD4Q9Y4D8 3996 aa4.73□□□□□ -1.65
GGA3-222ENST00000621217 PKHD1P08F94 4074 aa4.72□□□□□ -1.65
GGA3-222ENST00000621217 DYNC2H1Q8NCM8 4307 aaKnown RBP4.72□□□□□ -1.65
GGA3-222ENST00000621217 RYR1P21817 5038 aa4.71□□□□□ -1.66
GGA3-222ENST00000621217 KMT2CQ8NEZ4 4911 aaKnown RBP4.71□□□□□ -1.66
GGA3-222ENST00000621217 VPS13BQ7Z7G8 4022 aa4.69□□□□□ -1.66
GGA3-222ENST00000621217 KRTAP3-1Q9BYR8 98 aa4.69□□□□□ -1.66
GGA3-222ENST00000621217 KRTAP10-4P60372 401 aaPredicted RBP4.69□□□□□ -1.66
GGA3-222ENST00000621217 RYR3Q15413 4870 aa4.68□□□□□ -1.66
GGA3-222ENST00000621217 SACSQ9NZJ4 4579 aa4.67□□□□□ -1.66
GGA3-222ENST00000621217 FAT3Q8TDW7 4589 aa4.67□□□□□ -1.66
GGA3-222ENST00000621217 LRP1Q07954 4544 aaKnown RBP4.66□□□□□ -1.66
GGA3-222ENST00000621217 PP632Q6XCG6 107 aa4.65□□□□□ -1.66
GGA3-222ENST00000621217 ALMS1Q8TCU4 4167 aa4.65□□□□□ -1.66
GGA3-222ENST00000621217 APOBP04114 4563 aaKnown RBP4.63□□□□□ -1.67
GGA3-222ENST00000621217 MT1HL1P0DM35 61 aa4.62□□□□□ -1.67
GGA3-222ENST00000621217 TPRXLQ17RH7 258 aa4.61□□□□□ -1.67
GGA3-222ENST00000621217 TNP1P09430 55 aa4.57□□□□□ -1.68
GGA3-222ENST00000621217 FAT2Q9NYQ8 4349 aa4.57□□□□□ -1.68
GGA3-222ENST00000621217 RYR2Q92736 4967 aa4.56□□□□□ -1.68
GGA3-222ENST00000621217 KRTAP17-1Q9BYP8 105 aa4.53□□□□□ -1.68
GGA3-222ENST00000621217 KRTAP13-4Q3LI77 160 aa4.49□□□□□ -1.69
GGA3-222ENST00000621217 KRTAP10-6P60371 365 aaPredicted RBP4.45□□□□□ -1.7
GGA3-222ENST00000621217 PKD1P98161 4303 aa4.44□□□□□ -1.7
GGA3-222ENST00000621217 KRTAP12-2P59991 146 aa4.44□□□□□ -1.7
GGA3-222ENST00000621217 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
GGA3-222ENST00000621217 EPPK1P58107 5090 aaKnown RBP4.43□□□□□ -1.7
GGA3-222ENST00000621217 KRTAP3-3Q9BYR6 98 aa4.43□□□□□ -1.7
GGA3-222ENST00000621217 LRP2P98164 4655 aa4.42□□□□□ -1.7
GGA3-222ENST00000621217 HERC2O95714 4834 aa4.41□□□□□ -1.7
GGA3-222ENST00000621217 KRTAP12-1P59990 96 aa4.39□□□□□ -1.71
GGA3-222ENST00000621217 HSPG2P98160 4391 aa4.38□□□□□ -1.71
GGA3-222ENST00000621217 KRTAP3-2Q9BYR7 98 aa4.36□□□□□ -1.71
GGA3-222ENST00000621217 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
GGA3-222ENST00000621217 KRTAP10-10P60014 251 aa4.32□□□□□ -1.72
GGA3-222ENST00000621217 LPAP08519 4548 aa4.3□□□□□ -1.72
GGA3-222ENST00000621217 KRTAP4-1Q9BYQ7 146 aa4.26□□□□□ -1.73
GGA3-222ENST00000621217 ABCA13Q86UQ4 5058 aa4.25□□□□□ -1.73
GGA3-222ENST00000621217 LORP23490 312 aaPredicted RBP4.23□□□□□ -1.73
GGA3-222ENST00000621217 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
GGA3-222ENST00000621217 PKHD1L1Q86WI1 4243 aa4.2□□□□□ -1.74
GGA3-222ENST00000621217 INE1O15225 51 aa4.18□□□□□ -1.74
GGA3-222ENST00000621217 PRO2289Q9P1D8 64 aa4.18□□□□□ -1.74
GGA3-222ENST00000621217 PCLOQ9Y6V0 5065 aa4.17□□□□□ -1.74
GGA3-222ENST00000621217 HERC1Q15751 4861 aa4.16□□□□□ -1.74
GGA3-222ENST00000621217 MUC2Q02817 5179 aa4.16□□□□□ -1.74
GGA3-222ENST00000621217 RNF213Q63HN8 5207 aa4.14□□□□□ -1.75
GGA3-222ENST00000621217 TNXBP22105 4242 aa4.11□□□□□ -1.75
GGA3-222ENST00000621217 UBR4Q5T4S7 5183 aa4.04□□□□□ -1.76
GGA3-222ENST00000621217 FAT4Q6V0I7 4981 aa4.01□□□□□ -1.77
GGA3-222ENST00000621217 FSIP2Q5CZC0 6907 aa3.97□□□□□ -1.77
GGA3-222ENST00000621217 MT1HP80294 61 aa3.93□□□□□ -1.78
GGA3-222ENST00000621217 LCE2CQ5TA81 110 aa3.92□□□□□ -1.78
GGA3-222ENST00000621217 LCE2AQ5TA79 106 aaPredicted RBP3.91□□□□□ -1.78
GGA3-222ENST00000621217 KRTAP23-1A1A580 65 aa3.9□□□□□ -1.78
GGA3-222ENST00000621217 LCE2BO14633 110 aa3.9□□□□□ -1.78
GGA3-222ENST00000621217 MT2AP02795 61 aa3.85□□□□□ -1.79
GGA3-222ENST00000621217 MT1FP04733 61 aa3.84□□□□□ -1.79
GGA3-222ENST00000621217 HMCN2Q8NDA2 5059 aa3.82□□□□□ -1.8
GGA3-222ENST00000621217 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
GGA3-222ENST00000621217 MUC17Q685J3 4493 aa3.75□□□□□ -1.81
GGA3-222ENST00000621217 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
GGA3-222ENST00000621217 FLGP20930 4061 aaPredicted RBP3.72□□□□□ -1.81
GGA3-222ENST00000621217 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.81
GGA3-222ENST00000621217 KRTAP12-3P60328 96 aa3.71□□□□□ -1.82
GGA3-222ENST00000621217 KRTAP10-12P60413 245 aa3.7□□□□□ -1.82
GGA3-222ENST00000621217 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
GGA3-222ENST00000621217 KRTAP9-8Q9BYQ0 159 aa3.67□□□□□ -1.82
GGA3-222ENST00000621217 USH2AO75445 5202 aa3.62□□□□□ -1.83
GGA3-222ENST00000621217 CRCT1Q9UGL9 99 aa3.55□□□□□ -1.84
GGA3-222ENST00000621217 MT1BP07438 61 aa3.55□□□□□ -1.84
GGA3-222ENST00000621217 KRTAP10-7P60409 375 aaPredicted RBP3.53□□□□□ -1.84
GGA3-222ENST00000621217 KRTAP9-3Q9BYQ3 159 aa3.52□□□□□ -1.85
GGA3-222ENST00000621217 SPRR5A0A1B0GTR4 108 aa3.51□□□□□ -1.85
GGA3-222ENST00000621217 MT1XP80297 61 aa3.5□□□□□ -1.85
GGA3-222ENST00000621217 KRTAP19-8Q3LI54 63 aa3.49□□□□□ -1.85
GGA3-222ENST00000621217 KRTAP10-5P60370 271 aa3.48□□□□□ -1.85
GGA3-222ENST00000621217 KRTAP8-1Q8IUC2 63 aa3.48□□□□□ -1.85
GGA3-222ENST00000621217 KRTAP4-8A0A0G2JLE6 195 aa3.48□□□□□ -1.85
GGA3-222ENST00000621217 KRTAP4-8Q9BYQ9 185 aa3.48□□□□□ -1.85
GGA3-222ENST00000621217 OBSCNQ5VST9 7968 aa3.44□□□□□ -1.86
GGA3-222ENST00000621217 KRTAP19-5Q3LI72 72 aa3.44□□□□□ -1.86
GGA3-222ENST00000621217 KMT2DO14686 5537 aa3.44□□□□□ -1.86
GGA3-222ENST00000621217 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
GGA3-222ENST00000621217 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.87
GGA3-222ENST00000621217 SPRR2FQ96RM1 72 aa3.34□□□□□ -1.87
GGA3-222ENST00000621217 LCE3CQ5T5A8 94 aa3.29□□□□□ -1.88
GGA3-222ENST00000621217 KRTAP4-7Q9BYR0 210 aa3.28□□□□□ -1.88
GGA3-222ENST00000621217 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
GGA3-222ENST00000621217 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
GGA3-222ENST00000621217 KRTAP19-4Q3LI73 84 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms