RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 CMYA5Q8N3K9 4069 aa5.31□□□□□ -1.56
TCF4-248ENST00000616053 MT1HL1P0DM35 61 aa5.3□□□□□ -1.56
TCF4-248ENST00000616053 KRTAP4-5Q9BYR2 181 aa5.29□□□□□ -1.56
TCF4-248ENST00000616053 ALMS1Q8TCU4 4167 aa5.28□□□□□ -1.56
TCF4-248ENST00000616053 ANK3Q12955 4377 aaKnown RBP5.23□□□□□ -1.57
TCF4-248ENST00000616053 KRTAP23-1A1A580 65 aa5.17□□□□□ -1.58
TCF4-248ENST00000616053 SPRR2EP22531 72 aa5.16□□□□□ -1.58
TCF4-248ENST00000616053 SPRR2BP35325 72 aa5.16□□□□□ -1.58
TCF4-248ENST00000616053 SPRR2AP35326 72 aa5.16□□□□□ -1.58
TCF4-248ENST00000616053 FRAS1Q86XX4 4008 aa5.06□□□□□ -1.6
TCF4-248ENST00000616053 KMT2AQ03164 3969 aa5.06□□□□□ -1.6
TCF4-248ENST00000616053 SPRR2DP22532 72 aa5.02□□□□□ -1.61
TCF4-248ENST00000616053 KRTAP10-4P60372 401 aaPredicted RBP5□□□□□ -1.61
TCF4-248ENST00000616053 KRTAP3-2Q9BYR7 98 aa5□□□□□ -1.61
TCF4-248ENST00000616053 KRTAP3-3Q9BYR6 98 aa4.99□□□□□ -1.61
TCF4-248ENST00000616053 KRTAP12-4P60329 112 aa4.96□□□□□ -1.62
TCF4-248ENST00000616053 DNAH3Q8TD57 4116 aa4.93□□□□□ -1.62
TCF4-248ENST00000616053 ANK2Q01484 3957 aa4.89□□□□□ -1.63
TCF4-248ENST00000616053 LCE2BO14633 110 aa4.88□□□□□ -1.63
TCF4-248ENST00000616053 SPRR5A0A1B0GTR4 108 aa4.88□□□□□ -1.63
TCF4-248ENST00000616053 DNAH7Q8WXX0 4024 aa4.87□□□□□ -1.63
TCF4-248ENST00000616053 MT1HP80294 61 aa4.86□□□□□ -1.63
TCF4-248ENST00000616053 HECTD4Q9Y4D8 3996 aa4.85□□□□□ -1.63
TCF4-248ENST00000616053 KRTAP19-5Q3LI72 72 aa4.84□□□□□ -1.63
TCF4-248ENST00000616053 HUWE1Q7Z6Z7 4374 aaKnown RBP4.84□□□□□ -1.63
TCF4-248ENST00000616053 LCE3BQ5TA77 95 aa4.84□□□□□ -1.64
TCF4-248ENST00000616053 FLGP20930 4061 aaPredicted RBP4.83□□□□□ -1.64
TCF4-248ENST00000616053 LCE3CQ5T5A8 94 aa4.74□□□□□ -1.65
TCF4-248ENST00000616053 LCE2CQ5TA81 110 aa4.73□□□□□ -1.65
TCF4-248ENST00000616053 MT2AP02795 61 aa4.73□□□□□ -1.65
TCF4-248ENST00000616053 DNAH6Q9C0G6 4158 aa4.72□□□□□ -1.65
TCF4-248ENST00000616053 VPS13BQ7Z7G8 4022 aa4.71□□□□□ -1.66
TCF4-248ENST00000616053 DNAH9Q9NYC9 4486 aa4.67□□□□□ -1.66
TCF4-248ENST00000616053 LCE2DQ5TA82 110 aaPredicted RBP4.67□□□□□ -1.66
TCF4-248ENST00000616053 PRKDCP78527 4128 aaKnown RBP4.6□□□□□ -1.67
TCF4-248ENST00000616053 KRTAP19-4Q3LI73 84 aa4.6□□□□□ -1.67
TCF4-248ENST00000616053 SPRR2GQ9BYE4 73 aa4.59□□□□□ -1.68
TCF4-248ENST00000616053 DNAH2Q9P225 4427 aa4.57□□□□□ -1.68
TCF4-248ENST00000616053 MT1FP04733 61 aa4.57□□□□□ -1.68
TCF4-248ENST00000616053 DNAH1Q9P2D7 4330 aa4.57□□□□□ -1.68
TCF4-248ENST00000616053 MT1GP13640 62 aa4.55□□□□□ -1.68
TCF4-248ENST00000616053 DNAH10Q8IVF4 4471 aa4.54□□□□□ -1.68
TCF4-248ENST00000616053 PLECQ15149 4684 aaKnown RBP4.52□□□□□ -1.69
TCF4-248ENST00000616053 KRTAP4-1Q9BYQ7 146 aa4.51□□□□□ -1.69
TCF4-248ENST00000616053 LCE3EQ5T5B0 92 aa4.5□□□□□ -1.69
TCF4-248ENST00000616053 MT4P47944 62 aa4.49□□□□□ -1.69
TCF4-248ENST00000616053 VPS13DQ5THJ4 4388 aa4.49□□□□□ -1.69
TCF4-248ENST00000616053 LCE3DQ9BYE3 92 aa4.47□□□□□ -1.69
TCF4-248ENST00000616053 STARD9Q9P2P6 4700 aa4.46□□□□□ -1.7
TCF4-248ENST00000616053 DYNC2H1Q8NCM8 4307 aaKnown RBP4.41□□□□□ -1.7
TCF4-248ENST00000616053 LCE1BQ5T7P3 118 aa4.4□□□□□ -1.7
TCF4-248ENST00000616053 DNAH17Q9UFH2 4485 aa4.36□□□□□ -1.71
TCF4-248ENST00000616053 DNAH11Q96DT5 4516 aa4.36□□□□□ -1.71
TCF4-248ENST00000616053 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
TCF4-248ENST00000616053 KRTAP19-1Q8IUB9 90 aa4.31□□□□□ -1.72
TCF4-248ENST00000616053 DNAH5Q8TE73 4624 aa4.28□□□□□ -1.72
TCF4-248ENST00000616053 FAT2Q9NYQ8 4349 aa4.26□□□□□ -1.73
TCF4-248ENST00000616053 DNHD1Q96M86 4753 aa4.24□□□□□ -1.73
TCF4-248ENST00000616053 LCE5AQ5TCM9 118 aa4.22□□□□□ -1.73
TCF4-248ENST00000616053 LRP1BQ9NZR2 4599 aa4.2□□□□□ -1.74
TCF4-248ENST00000616053 DNAH8Q96JB1 4490 aa4.2□□□□□ -1.74
TCF4-248ENST00000616053 PKHD1P08F94 4074 aa4.19□□□□□ -1.74
TCF4-248ENST00000616053 MT3P25713 68 aa4.17□□□□□ -1.74
TCF4-248ENST00000616053 KRTAP20-1Q3LI63 56 aa4.14□□□□□ -1.75
TCF4-248ENST00000616053 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
TCF4-248ENST00000616053 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
TCF4-248ENST00000616053 LCE1CQ5T751 118 aa4.1□□□□□ -1.75
TCF4-248ENST00000616053 LCE1EQ5T753 118 aa4.1□□□□□ -1.75
TCF4-248ENST00000616053 LCE1FQ5T754 118 aa4.1□□□□□ -1.75
TCF4-248ENST00000616053 LCE1AQ5T7P2 110 aa4.1□□□□□ -1.75
TCF4-248ENST00000616053 KRTAP19-3Q7Z4W3 81 aa4.1□□□□□ -1.75
TCF4-248ENST00000616053 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
TCF4-248ENST00000616053 FAT1Q14517 4588 aa4.08□□□□□ -1.76
TCF4-248ENST00000616053 DYNC1H1Q14204 4646 aaKnown RBP4.07□□□□□ -1.76
TCF4-248ENST00000616053 KRTAP9-2Q9BYQ4 174 aa4.07□□□□□ -1.76
TCF4-248ENST00000616053 PKD1P98161 4303 aa4.05□□□□□ -1.76
TCF4-248ENST00000616053 MT1XP80297 61 aa4.05□□□□□ -1.76
TCF4-248ENST00000616053 KRTAP9-6A0A140TA67 174 aa4.03□□□□□ -1.77
TCF4-248ENST00000616053 SACSQ9NZJ4 4579 aa4□□□□□ -1.77
TCF4-248ENST00000616053 PKHD1L1Q86WI1 4243 aa3.98□□□□□ -1.77
TCF4-248ENST00000616053 PRM1P04553 51 aa3.97□□□□□ -1.77
TCF4-248ENST00000616053 APOBP04114 4563 aaKnown RBP3.97□□□□□ -1.77
TCF4-248ENST00000616053 LRP1Q07954 4544 aaKnown RBP3.95□□□□□ -1.78
TCF4-248ENST00000616053 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
TCF4-248ENST00000616053 HYDINQ4G0P3 5121 aa3.92□□□□□ -1.78
TCF4-248ENST00000616053 MYCBP2O75592 4640 aa3.91□□□□□ -1.78
TCF4-248ENST00000616053 MT1LQ93083 61 aa3.9□□□□□ -1.78
TCF4-248ENST00000616053 MT1BP07438 61 aa3.89□□□□□ -1.79
TCF4-248ENST00000616053 FAT3Q8TDW7 4589 aa3.89□□□□□ -1.79
TCF4-248ENST00000616053 HSPG2P98160 4391 aa3.88□□□□□ -1.79
TCF4-248ENST00000616053 KRTAP17-1Q9BYP8 105 aa3.88□□□□□ -1.79
TCF4-248ENST00000616053 TNXBP22105 4242 aa3.85□□□□□ -1.79
TCF4-248ENST00000616053 RYR1P21817 5038 aa3.83□□□□□ -1.8
TCF4-248ENST00000616053 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
TCF4-248ENST00000616053 KRTAP9-8Q9BYQ0 159 aa3.82□□□□□ -1.8
TCF4-248ENST00000616053 RYR3Q15413 4870 aa3.81□□□□□ -1.8
TCF4-248ENST00000616053 KRTAP4-7Q9BYR0 210 aa3.8□□□□□ -1.8
TCF4-248ENST00000616053 KRTAP9-3Q9BYQ3 159 aa3.8□□□□□ -1.8
TCF4-248ENST00000616053 MT1EP04732 61 aa3.77□□□□□ -1.81
TCF4-248ENST00000616053 MT1MQ8N339 61 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 182.6 ms