RNA–Protein interactions for RNA: ENST00000613795.4

CLCN3-211, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,874 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-211ENST00000613795 OTOGQ6ZRI0 2925 aa2.73□□□□□ -1.97
CLCN3-211ENST00000613795 LAMA5O15230 3695 aa2.72□□□□□ -1.97
CLCN3-211ENST00000613795 MT1HP80294 61 aa2.7□□□□□ -1.98
CLCN3-211ENST00000613795 SPENQ96T58 3664 aaKnown RBP2.69□□□□□ -1.98
CLCN3-211ENST00000613795 SVEP1Q4LDE5 3571 aa2.69□□□□□ -1.98
CLCN3-211ENST00000613795 VWFP04275 2813 aa2.69□□□□□ -1.98
CLCN3-211ENST00000613795 SPRR5A0A1B0GTR4 108 aa2.68□□□□□ -1.98
CLCN3-211ENST00000613795 NBPF19A0A087WUL8 3843 aa2.67□□□□□ -1.98
CLCN3-211ENST00000613795 DNAH9Q9NYC9 4486 aa2.66□□□□□ -1.98
CLCN3-211ENST00000613795 AKAP9Q99996 3911 aa2.66□□□□□ -1.98
CLCN3-211ENST00000613795 MT3P25713 68 aa2.66□□□□□ -1.98
CLCN3-211ENST00000613795 MT2AP02795 61 aa2.65□□□□□ -1.99
CLCN3-211ENST00000613795 DNAH11Q96DT5 4516 aa2.64□□□□□ -1.99
CLCN3-211ENST00000613795 DYNC1H1Q14204 4646 aaKnown RBP2.63□□□□□ -1.99
CLCN3-211ENST00000613795 LCE3CQ5T5A8 94 aa2.63□□□□□ -1.99
CLCN3-211ENST00000613795 KRTAP4-1Q9BYQ7 146 aa2.62□□□□□ -1.99
CLCN3-211ENST00000613795 DNAH6Q9C0G6 4158 aa2.62□□□□□ -1.99
CLCN3-211ENST00000613795 DNAH17Q9UFH2 4485 aa2.62□□□□□ -1.99
CLCN3-211ENST00000613795 COL7A1Q02388 2944 aa2.6□□□□□ -1.99
CLCN3-211ENST00000613795 VPS13CQ709C8 3753 aa2.6□□□□□ -1.99
CLCN3-211ENST00000613795 DNAH3Q8TD57 4116 aa2.6□□□□□ -1.99
CLCN3-211ENST00000613795 FBN1P35555 2871 aaKnown RBP2.59□□□□□ -1.99
CLCN3-211ENST00000613795 KRTAP10-7P60409 375 aaPredicted RBP2.58□□□□□ -2
CLCN3-211ENST00000613795 VPS13DQ5THJ4 4388 aa2.58□□□□□ -2
CLCN3-211ENST00000613795 DNAH5Q8TE73 4624 aa2.55□□□□□ -2
CLCN3-211ENST00000613795 MT1FP04733 61 aa2.55□□□□□ -2
CLCN3-211ENST00000613795 TRRAPQ9Y4A5 3859 aa2.55□□□□□ -2
CLCN3-211ENST00000613795 DYNC2H1Q8NCM8 4307 aaKnown RBP2.55□□□□□ -2
CLCN3-211ENST00000613795 KRTAP19-8Q3LI54 63 aa2.55□□□□□ -2
CLCN3-211ENST00000613795 HERC1Q15751 4861 aa2.54□□□□□ -2
CLCN3-211ENST00000613795 KRTAP19-5Q3LI72 72 aa2.54□□□□□ -2
CLCN3-211ENST00000613795 MUC3AQ02505 3323 aa2.53□□□□□ -2
CLCN3-211ENST00000613795 DNAH8Q96JB1 4490 aa2.53□□□□□ -2
CLCN3-211ENST00000613795 CMYA5Q8N3K9 4069 aa2.53□□□□□ -2
CLCN3-211ENST00000613795 HSPG2P98160 4391 aa2.53□□□□□ -2
CLCN3-211ENST00000613795 SACSQ9NZJ4 4579 aa2.52□□□□□ -2.01
CLCN3-211ENST00000613795 FAT2Q9NYQ8 4349 aa2.52□□□□□ -2.01
CLCN3-211ENST00000613795 CSMD2Q7Z408 3487 aa2.51□□□□□ -2.01
CLCN3-211ENST00000613795 PLECQ15149 4684 aaKnown RBP2.51□□□□□ -2.01
CLCN3-211ENST00000613795 MYCBP2O75592 4640 aa2.5□□□□□ -2.01
CLCN3-211ENST00000613795 CUBNO60494 3623 aa2.5□□□□□ -2.01
CLCN3-211ENST00000613795 SPRR2FQ96RM1 72 aa2.5□□□□□ -2.01
CLCN3-211ENST00000613795 KRTAP12-4P60329 112 aa2.46□□□□□ -2.02
CLCN3-211ENST00000613795 ZNF469Q96JG9 3925 aaPredicted RBP2.45□□□□□ -2.02
CLCN3-211ENST00000613795 DNAH7Q8WXX0 4024 aa2.45□□□□□ -2.02
CLCN3-211ENST00000613795 LOC100996750A0A140TA64 210 aa2.44□□□□□ -2.02
CLCN3-211ENST00000613795 KRTAP4-6Q9BYQ5 205 aa2.44□□□□□ -2.02
CLCN3-211ENST00000613795 LRP1BQ9NZR2 4599 aa2.41□□□□□ -2.02
CLCN3-211ENST00000613795 KRTAP19-1Q8IUB9 90 aa2.41□□□□□ -2.02
CLCN3-211ENST00000613795 SPRR2EP22531 72 aa2.4□□□□□ -2.03
CLCN3-211ENST00000613795 SPRR2BP35325 72 aa2.4□□□□□ -2.03
CLCN3-211ENST00000613795 SPRR2AP35326 72 aa2.4□□□□□ -2.03
CLCN3-211ENST00000613795 APOBP04114 4563 aaKnown RBP2.39□□□□□ -2.03
CLCN3-211ENST00000613795 PRKDCP78527 4128 aaKnown RBP2.39□□□□□ -2.03
CLCN3-211ENST00000613795 MT1XP80297 61 aa2.38□□□□□ -2.03
CLCN3-211ENST00000613795 LRP1Q07954 4544 aaKnown RBP2.38□□□□□ -2.03
CLCN3-211ENST00000613795 FAT1Q14517 4588 aa2.38□□□□□ -2.03
CLCN3-211ENST00000613795 MT1GP13640 62 aa2.37□□□□□ -2.03
CLCN3-211ENST00000613795 CSMD3Q7Z407 3707 aa2.36□□□□□ -2.03
CLCN3-211ENST00000613795 FAT3Q8TDW7 4589 aa2.35□□□□□ -2.03
CLCN3-211ENST00000613795 MT1BP07438 61 aa2.35□□□□□ -2.03
CLCN3-211ENST00000613795 SPRR2DP22532 72 aa2.34□□□□□ -2.03
CLCN3-211ENST00000613795 KRTAP9-8Q9BYQ0 159 aa2.34□□□□□ -2.03
CLCN3-211ENST00000613795 ANK2Q01484 3957 aa2.34□□□□□ -2.04
CLCN3-211ENST00000613795 FRAS1Q86XX4 4008 aa2.32□□□□□ -2.04
CLCN3-211ENST00000613795 STARD9Q9P2P6 4700 aa2.32□□□□□ -2.04
CLCN3-211ENST00000613795 KRTAP9-3Q9BYQ3 159 aa2.32□□□□□ -2.04
CLCN3-211ENST00000613795 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
CLCN3-211ENST00000613795 LCE3BQ5TA77 95 aa2.31□□□□□ -2.04
CLCN3-211ENST00000613795 LCE3DQ9BYE3 92 aa2.31□□□□□ -2.04
CLCN3-211ENST00000613795 HECTD4Q9Y4D8 3996 aa2.28□□□□□ -2.04
CLCN3-211ENST00000613795 RYR2Q92736 4967 aa2.28□□□□□ -2.04
CLCN3-211ENST00000613795 PKHD1L1Q86WI1 4243 aa2.28□□□□□ -2.04
CLCN3-211ENST00000613795 DNHD1Q96M86 4753 aa2.28□□□□□ -2.04
CLCN3-211ENST00000613795 KRTAP9-6A0A140TA67 174 aa2.28□□□□□ -2.04
CLCN3-211ENST00000613795 KRTAP9-2Q9BYQ4 174 aa2.27□□□□□ -2.05
CLCN3-211ENST00000613795 MUC17Q685J3 4493 aa2.26□□□□□ -2.05
CLCN3-211ENST00000613795 VPS13BQ7Z7G8 4022 aa2.26□□□□□ -2.05
CLCN3-211ENST00000613795 MT1LQ93083 61 aa2.25□□□□□ -2.05
CLCN3-211ENST00000613795 KMT2AQ03164 3969 aa2.24□□□□□ -2.05
CLCN3-211ENST00000613795 KRTAP19-3Q7Z4W3 81 aa2.24□□□□□ -2.05
CLCN3-211ENST00000613795 BIRC6Q9NR09 4857 aa2.24□□□□□ -2.05
CLCN3-211ENST00000613795 RYR3Q15413 4870 aa2.24□□□□□ -2.05
CLCN3-211ENST00000613795 RYR1P21817 5038 aa2.23□□□□□ -2.05
CLCN3-211ENST00000613795 PKD1P98161 4303 aa2.21□□□□□ -2.06
CLCN3-211ENST00000613795 MT1EP04732 61 aa2.2□□□□□ -2.06
CLCN3-211ENST00000613795 LYSTQ99698 3801 aa2.2□□□□□ -2.06
CLCN3-211ENST00000613795 LCE5AQ5TCM9 118 aa2.19□□□□□ -2.06
CLCN3-211ENST00000613795 PRM1P04553 51 aa2.18□□□□□ -2.06
CLCN3-211ENST00000613795 KRTAP19-6Q3LI70 58 aa2.17□□□□□ -2.06
CLCN3-211ENST00000613795 KRTAP9-4Q9BYQ2 154 aa2.16□□□□□ -2.06
CLCN3-211ENST00000613795 KRTAP2-3P0C7H8 128 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 LCE4AQ5TA78 99 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KRTAP2-4Q9BYR9 128 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KRTAP2-1Q9BYU5 128 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KRTAP4-8A0A0G2JLE6 195 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KRTAP19-2Q3LHN2 52 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KRTAP4-8Q9BYQ9 185 aa2.15□□□□□ -2.07
CLCN3-211ENST00000613795 KIAA1109Q2LD37 5005 aa2.14□□□□□ -2.07
CLCN3-211ENST00000613795 LCE1FQ5T754 118 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms