RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 DNAH8Q96JB1 4490 aa4.21□□□□□ -1.74
COMMD3-215ENST00000602574 BAHCC1Q9P281 2608 aa4.2□□□□□ -1.74
COMMD3-215ENST00000602574 DNAH17Q9UFH2 4485 aa4.2□□□□□ -1.74
COMMD3-215ENST00000602574 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
COMMD3-215ENST00000602574 KRTAP4-7Q9BYR0 210 aa4.19□□□□□ -1.74
COMMD3-215ENST00000602574 FASNP49327 2511 aaKnown RBP4.19□□□□□ -1.74
COMMD3-215ENST00000602574 PRKDCP78527 4128 aaKnown RBP4.17□□□□□ -1.74
COMMD3-215ENST00000602574 LYSTQ99698 3801 aa4.16□□□□□ -1.74
COMMD3-215ENST00000602574 FLNBO75369 2602 aaKnown RBP4.16□□□□□ -1.74
COMMD3-215ENST00000602574 DNAH7Q8WXX0 4024 aa4.15□□□□□ -1.74
COMMD3-215ENST00000602574 KRTAP17-1Q9BYP8 105 aa4.15□□□□□ -1.75
COMMD3-215ENST00000602574 HECTD4Q9Y4D8 3996 aa4.11□□□□□ -1.75
COMMD3-215ENST00000602574 DNAH6Q9C0G6 4158 aa4.11□□□□□ -1.75
COMMD3-215ENST00000602574 Q5VSD8 79 aa4.1□□□□□ -1.75
COMMD3-215ENST00000602574 TGP01266 2768 aa4.09□□□□□ -1.75
COMMD3-215ENST00000602574 KRTAP10-1P60331 282 aa4.09□□□□□ -1.76
COMMD3-215ENST00000602574 KRTAP10-2P60368 255 aa4.09□□□□□ -1.76
COMMD3-215ENST00000602574 DMBT1Q9UGM3 2413 aaPredicted RBP4.08□□□□□ -1.76
COMMD3-215ENST00000602574 DNAH11Q96DT5 4516 aa4.05□□□□□ -1.76
COMMD3-215ENST00000602574 NBEAL1Q6ZS30 2694 aa4.03□□□□□ -1.76
COMMD3-215ENST00000602574 LCE1DQ5T752 114 aa4.03□□□□□ -1.76
COMMD3-215ENST00000602574 COL7A1Q02388 2944 aa4.03□□□□□ -1.76
COMMD3-215ENST00000602574 PLECQ15149 4684 aaKnown RBP4.03□□□□□ -1.76
COMMD3-215ENST00000602574 C9orf92A6NGG3 77 aa4.02□□□□□ -1.77
COMMD3-215ENST00000602574 KRTAP19-4Q3LI73 84 aa4.02□□□□□ -1.77
COMMD3-215ENST00000602574 SACSQ9NZJ4 4579 aa4.02□□□□□ -1.77
COMMD3-215ENST00000602574 DNAH2Q9P225 4427 aa4.02□□□□□ -1.77
COMMD3-215ENST00000602574 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
COMMD3-215ENST00000602574 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
COMMD3-215ENST00000602574 A0A1B0GVY2 172 aa3.98□□□□□ -1.77
COMMD3-215ENST00000602574 STAB2Q8WWQ8 2551 aa3.97□□□□□ -1.77
COMMD3-215ENST00000602574 STAB1Q9NY15 2570 aa3.97□□□□□ -1.77
COMMD3-215ENST00000602574 MYCBP2O75592 4640 aa3.96□□□□□ -1.78
COMMD3-215ENST00000602574 KRTAP19-1Q8IUB9 90 aa3.96□□□□□ -1.78
COMMD3-215ENST00000602574 NOTCH1P46531 2555 aa3.94□□□□□ -1.78
COMMD3-215ENST00000602574 KRTAP5-3Q6L8H2 238 aa3.93□□□□□ -1.78
COMMD3-215ENST00000602574 DNAH5Q8TE73 4624 aa3.91□□□□□ -1.78
COMMD3-215ENST00000602574 STARD9Q9P2P6 4700 aa3.9□□□□□ -1.78
COMMD3-215ENST00000602574 MGAM2Q2M2H8 2515 aa3.9□□□□□ -1.79
COMMD3-215ENST00000602574 FBN3Q75N90 2809 aa3.9□□□□□ -1.79
COMMD3-215ENST00000602574 KRTAP10-4P60372 401 aaPredicted RBP3.88□□□□□ -1.79
COMMD3-215ENST00000602574 PKHD1L1Q86WI1 4243 aa3.87□□□□□ -1.79
COMMD3-215ENST00000602574 KRTAP9-8Q9BYQ0 159 aa3.87□□□□□ -1.79
COMMD3-215ENST00000602574 PKD1P98161 4303 aa3.81□□□□□ -1.8
COMMD3-215ENST00000602574 LRP1BQ9NZR2 4599 aa3.8□□□□□ -1.8
COMMD3-215ENST00000602574 KMT2AQ03164 3969 aa3.8□□□□□ -1.8
COMMD3-215ENST00000602574 PKHD1P08F94 4074 aa3.8□□□□□ -1.8
COMMD3-215ENST00000602574 TNP1P09430 55 aa3.8□□□□□ -1.8
COMMD3-215ENST00000602574 VPS13BQ7Z7G8 4022 aa3.79□□□□□ -1.8
COMMD3-215ENST00000602574 KRTAP4-5Q9BYR2 181 aa3.78□□□□□ -1.8
COMMD3-215ENST00000602574 KRTAP4-11Q9BYQ6 195 aa3.76□□□□□ -1.81
COMMD3-215ENST00000602574 APOBP04114 4563 aaKnown RBP3.75□□□□□ -1.81
COMMD3-215ENST00000602574 SMR3BP02814 79 aaPredicted RBP3.73□□□□□ -1.81
COMMD3-215ENST00000602574 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
COMMD3-215ENST00000602574 TNXBP22105 4242 aa3.71□□□□□ -1.82
COMMD3-215ENST00000602574 FAT2Q9NYQ8 4349 aa3.7□□□□□ -1.82
COMMD3-215ENST00000602574 LRP1Q07954 4544 aaKnown RBP3.68□□□□□ -1.82
COMMD3-215ENST00000602574 HSPG2P98160 4391 aa3.65□□□□□ -1.83
COMMD3-215ENST00000602574 DYNC1H1Q14204 4646 aaKnown RBP3.63□□□□□ -1.83
COMMD3-215ENST00000602574 FAT1Q14517 4588 aa3.63□□□□□ -1.83
COMMD3-215ENST00000602574 FAT3Q8TDW7 4589 aa3.63□□□□□ -1.83
COMMD3-215ENST00000602574 DNHD1Q96M86 4753 aa3.6□□□□□ -1.83
COMMD3-215ENST00000602574 KRTAP9-7A8MTY7 169 aa3.56□□□□□ -1.84
COMMD3-215ENST00000602574 KRTAP21-3Q3LHN1 58 aa3.54□□□□□ -1.84
COMMD3-215ENST00000602574 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
COMMD3-215ENST00000602574 MT1HL1P0DM35 61 aa3.53□□□□□ -1.85
COMMD3-215ENST00000602574 LCE5AQ5TCM9 118 aa3.5□□□□□ -1.85
COMMD3-215ENST00000602574 HYDINQ4G0P3 5121 aa3.49□□□□□ -1.85
COMMD3-215ENST00000602574 KRTAP9-3Q9BYQ3 159 aa3.47□□□□□ -1.85
COMMD3-215ENST00000602574 FLGP20930 4061 aaPredicted RBP3.45□□□□□ -1.86
COMMD3-215ENST00000602574 KRTAP8-1Q8IUC2 63 aa3.45□□□□□ -1.86
COMMD3-215ENST00000602574 KRTAP10-12P60413 245 aa3.45□□□□□ -1.86
COMMD3-215ENST00000602574 KRTAP2-2Q9BYT5 123 aa3.4□□□□□ -1.86
COMMD3-215ENST00000602574 LCE3AQ5TA76 89 aa3.39□□□□□ -1.87
COMMD3-215ENST00000602574 KRTAP19-2Q3LHN2 52 aa3.35□□□□□ -1.87
COMMD3-215ENST00000602574 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
COMMD3-215ENST00000602574 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
COMMD3-215ENST00000602574 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
COMMD3-215ENST00000602574 KRTAP10-5P60370 271 aa3.3□□□□□ -1.88
COMMD3-215ENST00000602574 RYR2Q92736 4967 aa3.27□□□□□ -1.89
COMMD3-215ENST00000602574 SPRR2GQ9BYE4 73 aa3.27□□□□□ -1.89
COMMD3-215ENST00000602574 KMT2CQ8NEZ4 4911 aaKnown RBP3.26□□□□□ -1.89
COMMD3-215ENST00000602574 KRTAP4-1Q9BYQ7 146 aa3.25□□□□□ -1.89
COMMD3-215ENST00000602574 HERC1Q15751 4861 aa3.25□□□□□ -1.89
COMMD3-215ENST00000602574 MUC17Q685J3 4493 aa3.24□□□□□ -1.89
COMMD3-215ENST00000602574 KRTAP12-3P60328 96 aa3.24□□□□□ -1.89
COMMD3-215ENST00000602574 RYR1P21817 5038 aa3.23□□□□□ -1.89
COMMD3-215ENST00000602574 LRP2P98164 4655 aa3.18□□□□□ -1.9
COMMD3-215ENST00000602574 M0R2T5 61 aa3.18□□□□□ -1.9
COMMD3-215ENST00000602574 RYR3Q15413 4870 aa3.14□□□□□ -1.91
COMMD3-215ENST00000602574 KRTAP6-3Q3LI67 103 aa3.14□□□□□ -1.91
COMMD3-215ENST00000602574 LPAP08519 4548 aa3.13□□□□□ -1.91
COMMD3-215ENST00000602574 LCE3CQ5T5A8 94 aa3.12□□□□□ -1.91
COMMD3-215ENST00000602574 KRTAP10-7P60409 375 aaPredicted RBP3.12□□□□□ -1.91
COMMD3-215ENST00000602574 KRTAP19-8Q3LI54 63 aa3.11□□□□□ -1.91
COMMD3-215ENST00000602574 LCE1AQ5T7P2 110 aa3.08□□□□□ -1.92
COMMD3-215ENST00000602574 KIAA1109Q2LD37 5005 aa3.06□□□□□ -1.92
COMMD3-215ENST00000602574 KRTAP12-4P60329 112 aa3.04□□□□□ -1.92
COMMD3-215ENST00000602574 EPPK1P58107 5090 aaKnown RBP3.03□□□□□ -1.92
COMMD3-215ENST00000602574 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms