RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 LCA10Q71F78 164 aa7.55□□□□□ -1.2
LSM4-206ENST00000600289 C5orf47Q569G3 176 aa7.54□□□□□ -1.2
LSM4-206ENST00000600289 CSAG1Q6PB30 78 aa7.52□□□□□ -1.21
LSM4-206ENST00000600289 MP68P56378 58 aa7.48□□□□□ -1.21
LSM4-206ENST00000600289 LINC00208Q96KT6 92 aa7.47□□□□□ -1.21
LSM4-206ENST00000600289 KRTAP3-3Q9BYR6 98 aa7.47□□□□□ -1.21
LSM4-206ENST00000600289 A8MUN3 132 aa7.44□□□□□ -1.22
LSM4-206ENST00000600289 H3BPC8 53 aa7.44□□□□□ -1.22
LSM4-206ENST00000600289 K7ERU9 68 aa7.44□□□□□ -1.22
LSM4-206ENST00000600289 IMUPQ9GZP8 106 aa7.44□□□□□ -1.22
LSM4-206ENST00000600289 KLKP1Q107X0 134 aa7.43□□□□□ -1.22
LSM4-206ENST00000600289 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.22
LSM4-206ENST00000600289 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.22
LSM4-206ENST00000600289 SCGB1A1P11684 91 aa7.38□□□□□ -1.23
LSM4-206ENST00000600289 MT-ATP8P03928 68 aa7.35□□□□□ -1.23
LSM4-206ENST00000600289 NDUFC1O43677 76 aa7.33□□□□□ -1.24
LSM4-206ENST00000600289 SPRR2GQ9BYE4 73 aa7.33□□□□□ -1.24
LSM4-206ENST00000600289 H0YAA0 97 aa7.31□□□□□ -1.24
LSM4-206ENST00000600289 SMIM20Q8N5G0 67 aa7.3□□□□□ -1.24
LSM4-206ENST00000600289 CRIPTQ9P021 101 aa7.28□□□□□ -1.24
LSM4-206ENST00000600289 DMAC1Q96GE9 116 aa7.27□□□□□ -1.25
LSM4-206ENST00000600289 MDN1Q9NU22 5596 aa7.27□□□□□ -1.25
LSM4-206ENST00000600289 TRAV7A0A075B6U4 112 aa7.26□□□□□ -1.25
LSM4-206ENST00000600289 KRTAP19-8Q3LI54 63 aa7.26□□□□□ -1.25
LSM4-206ENST00000600289 KMT2DO14686 5537 aa7.22□□□□□ -1.25
LSM4-206ENST00000600289 MT1BP07438 61 aa7.21□□□□□ -1.26
LSM4-206ENST00000600289 Q5VV11 94 aa7.21□□□□□ -1.26
LSM4-206ENST00000600289 KRTAP2-3P0C7H8 128 aa7.2□□□□□ -1.26
LSM4-206ENST00000600289 KRTAP2-4Q9BYR9 128 aa7.2□□□□□ -1.26
LSM4-206ENST00000600289 KRTAP5-9P26371 169 aa7.15□□□□□ -1.26
LSM4-206ENST00000600289 ADM2Q7Z4H4 148 aa7.14□□□□□ -1.27
LSM4-206ENST00000600289 ACYP2P14621 99 aa7.09□□□□□ -1.27
LSM4-206ENST00000600289 SERP2Q8N6R1 65 aa7.07□□□□□ -1.28
LSM4-206ENST00000600289 C20orf197Q8N268 126 aa7.05□□□□□ -1.28
LSM4-206ENST00000600289 A6NN06 94 aa7.04□□□□□ -1.28
LSM4-206ENST00000600289 SNURFQ9Y675 71 aa7.04□□□□□ -1.28
LSM4-206ENST00000600289 KRTAP10-5P60370 271 aa7.03□□□□□ -1.28
LSM4-206ENST00000600289 SPANXA2-OT1Q8N9U9 137 aa7.02□□□□□ -1.29
LSM4-206ENST00000600289 P0C880 135 aa7□□□□□ -1.29
LSM4-206ENST00000600289 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
LSM4-206ENST00000600289 SPTSSBQ8NFR3 76 aa6.99□□□□□ -1.29
LSM4-206ENST00000600289 R4GN34 69 aa6.96□□□□□ -1.3
LSM4-206ENST00000600289 CHKB-CPT1BH3BT56 60 aa6.92□□□□□ -1.3
LSM4-206ENST00000600289 KRTAP2-2Q9BYT5 123 aa6.92□□□□□ -1.3
LSM4-206ENST00000600289 KRTAP2-1Q9BYU5 128 aa6.92□□□□□ -1.3
LSM4-206ENST00000600289 GPR98Q8WXG9 6306 aa6.9□□□□□ -1.3
LSM4-206ENST00000600289 M0QZ58 72 aa6.9□□□□□ -1.3
LSM4-206ENST00000600289 COX7CP15954 63 aa6.89□□□□□ -1.31
LSM4-206ENST00000600289 PLAC4Q8WY50 150 aa6.85□□□□□ -1.31
LSM4-206ENST00000600289 PRO2289Q9P1D8 64 aa6.82□□□□□ -1.32
LSM4-206ENST00000600289 MT1XP80297 61 aa6.8□□□□□ -1.32
LSM4-206ENST00000600289 SPRR2EP22531 72 aa6.79□□□□□ -1.32
LSM4-206ENST00000600289 SPRR2BP35325 72 aa6.79□□□□□ -1.32
LSM4-206ENST00000600289 SPRR2AP35326 72 aa6.79□□□□□ -1.32
LSM4-206ENST00000600289 H7BZZ5 65 aa6.76□□□□□ -1.33
LSM4-206ENST00000600289 COA5Q86WW8 74 aa6.76□□□□□ -1.33
LSM4-206ENST00000600289 LINC01554Q52M75 96 aa6.75□□□□□ -1.33
LSM4-206ENST00000600289 CYSTM1Q9H1C7 97 aa6.73□□□□□ -1.33
LSM4-206ENST00000600289 SPRR2FQ96RM1 72 aa6.69□□□□□ -1.34
LSM4-206ENST00000600289 ANAPC13Q9BS18 74 aa6.68□□□□□ -1.34
LSM4-206ENST00000600289 KRTAP12-2P59991 146 aa6.66□□□□□ -1.34
LSM4-206ENST00000600289 LCE1AQ5T7P2 110 aa6.63□□□□□ -1.35
LSM4-206ENST00000600289 KRTAP13-4Q3LI77 160 aa6.61□□□□□ -1.35
LSM4-206ENST00000600289 SEC61GP60059 68 aa6.58□□□□□ -1.36
LSM4-206ENST00000600289 SPRR2DP22532 72 aa6.57□□□□□ -1.36
LSM4-206ENST00000600289 SERP1Q9Y6X1 66 aa6.57□□□□□ -1.36
LSM4-206ENST00000600289 CCDC179H3BU77 68 aa6.54□□□□□ -1.36
LSM4-206ENST00000600289 ATP5EP56381 51 aaPredicted RBP6.5□□□□□ -1.37
LSM4-206ENST00000600289 KRTAP10-12P60413 245 aa6.49□□□□□ -1.37
LSM4-206ENST00000600289 LCE3BQ5TA77 95 aa6.48□□□□□ -1.37
LSM4-206ENST00000600289 KRTAP8-1Q8IUC2 63 aa6.48□□□□□ -1.37
LSM4-206ENST00000600289 KRTAP10-7P60409 375 aaPredicted RBP6.47□□□□□ -1.37
LSM4-206ENST00000600289 A0A1B0GU33 70 aa6.46□□□□□ -1.38
LSM4-206ENST00000600289 LOC100996750A0A140TA64 210 aa6.44□□□□□ -1.38
LSM4-206ENST00000600289 KRTAP4-6Q9BYQ5 205 aa6.44□□□□□ -1.38
LSM4-206ENST00000600289 KRTAP4-8A0A0G2JLE6 195 aa6.41□□□□□ -1.38
LSM4-206ENST00000600289 A0A1B0GU69 56 aa6.41□□□□□ -1.38
LSM4-206ENST00000600289 SPATA8Q6RVD6 105 aa6.41□□□□□ -1.38
LSM4-206ENST00000600289 CAMK2N1Q7Z7J9 78 aa6.41□□□□□ -1.38
LSM4-206ENST00000600289 KRTAP4-8Q9BYQ9 185 aa6.41□□□□□ -1.38
LSM4-206ENST00000600289 DSTQ03001 7570 aaKnown RBP6.37□□□□□ -1.39
LSM4-206ENST00000600289 A0A0D9SG42 100 aa6.36□□□□□ -1.39
LSM4-206ENST00000600289 TMEM258P61165 79 aa6.36□□□□□ -1.39
LSM4-206ENST00000600289 KRTAP12-1P59990 96 aa6.32□□□□□ -1.4
LSM4-206ENST00000600289 SMIM26A0A096LP01 95 aa6.3□□□□□ -1.4
LSM4-206ENST00000600289 PRR15LQ9BU68 103 aa6.29□□□□□ -1.4
LSM4-206ENST00000600289 SPINT4Q6UDR6 99 aa6.28□□□□□ -1.4
LSM4-206ENST00000600289 KRTAP4-9Q9BYQ8 210 aa6.28□□□□□ -1.4
LSM4-206ENST00000600289 LINC01558Q9Y6Z2 57 aa6.27□□□□□ -1.41
LSM4-206ENST00000600289 A8MU10 97 aa6.2□□□□□ -1.42
LSM4-206ENST00000600289 HMCN1Q96RW7 5635 aa6.08□□□□□ -1.44
LSM4-206ENST00000600289 AHNAK2Q8IVF2 5795 aa6.08□□□□□ -1.44
LSM4-206ENST00000600289 UQCR11O14957 56 aa6.08□□□□□ -1.44
LSM4-206ENST00000600289 KRTAP19-7Q3SYF9 63 aa6.08□□□□□ -1.44
LSM4-206ENST00000600289 KRTAP5-10Q6L8G5 202 aa6.07□□□□□ -1.44
LSM4-206ENST00000600289 LCE1DQ5T752 114 aa6.04□□□□□ -1.44
LSM4-206ENST00000600289 MT1EP04732 61 aa6.02□□□□□ -1.45
LSM4-206ENST00000600289 C10orf95Q9H7T3 257 aa6.02□□□□□ -1.45
LSM4-206ENST00000600289 V9GYY9 64 aa5.99□□□□□ -1.45
LSM4-206ENST00000600289 SVIPQ8NHG7 77 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms