RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 BPY2O14599 106 aa4.23□□□□□ -1.73
TRIM28-210ENST00000597618 KRTAP12-2P59991 146 aa4.23□□□□□ -1.73
TRIM28-210ENST00000597618 TSTD3H0UI37 97 aa4.22□□□□□ -1.73
TRIM28-210ENST00000597618 C9orf118A6NHY6 69 aa4.21□□□□□ -1.74
TRIM28-210ENST00000597618 H3BT86 120 aa4.21□□□□□ -1.74
TRIM28-210ENST00000597618 DSTQ03001 7570 aaKnown RBP4.19□□□□□ -1.74
TRIM28-210ENST00000597618 BATFQ16520 125 aa4.19□□□□□ -1.74
TRIM28-210ENST00000597618 TAX1BP3O14907 124 aa4.18□□□□□ -1.74
TRIM28-210ENST00000597618 Q8N9L7 120 aa4.18□□□□□ -1.74
TRIM28-210ENST00000597618 A0A1W2PPM0 123 aa4.17□□□□□ -1.74
TRIM28-210ENST00000597618 A8MUN3 132 aa4.17□□□□□ -1.74
TRIM28-210ENST00000597618 PLAC4Q8WY50 150 aa4.17□□□□□ -1.74
TRIM28-210ENST00000597618 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
TRIM28-210ENST00000597618 KRTAP4-8Q9BYQ9 185 aa4.16□□□□□ -1.74
TRIM28-210ENST00000597618 H0YAA0 97 aa4.15□□□□□ -1.75
TRIM28-210ENST00000597618 LOC100996750A0A140TA64 210 aa4.14□□□□□ -1.75
TRIM28-210ENST00000597618 LOC105371267A0A1B0GV96 52 aa4.14□□□□□ -1.75
TRIM28-210ENST00000597618 H3BS24 57 aa4.14□□□□□ -1.75
TRIM28-210ENST00000597618 KRTAP4-6Q9BYQ5 205 aa4.14□□□□□ -1.75
TRIM28-210ENST00000597618 A0A087WVE0 104 aa4.11□□□□□ -1.75
TRIM28-210ENST00000597618 SPCS1Q9Y6A9 102 aa4.11□□□□□ -1.75
TRIM28-210ENST00000597618 NDUFC1O43677 76 aa4.08□□□□□ -1.76
TRIM28-210ENST00000597618 ADM2Q7Z4H4 148 aa4.08□□□□□ -1.76
TRIM28-210ENST00000597618 TP53AIP1Q9HCN2 124 aa4.08□□□□□ -1.76
TRIM28-210ENST00000597618 PRO0461Q9UI25 63 aa4.07□□□□□ -1.76
TRIM28-210ENST00000597618 UBL5Q9BZL1 73 aa4.06□□□□□ -1.76
TRIM28-210ENST00000597618 KRTAP4-9Q9BYQ8 210 aa4.05□□□□□ -1.76
TRIM28-210ENST00000597618 CYP4F30PQ9H0H9 118 aa4.05□□□□□ -1.76
TRIM28-210ENST00000597618 KRTAP10-7P60409 375 aaPredicted RBP4.04□□□□□ -1.76
TRIM28-210ENST00000597618 KRTAP10-12P60413 245 aa4.04□□□□□ -1.76
TRIM28-210ENST00000597618 COL5A1-AS1Q5SY13 56 aa4.04□□□□□ -1.76
TRIM28-210ENST00000597618 K7EP34 96 aa4.03□□□□□ -1.76
TRIM28-210ENST00000597618 R4GN34 69 aa4.03□□□□□ -1.76
TRIM28-210ENST00000597618 LOC101927531A0A1B0GV80 90 aa3.98□□□□□ -1.77
TRIM28-210ENST00000597618 F8W1H4 67 aa3.98□□□□□ -1.77
TRIM28-210ENST00000597618 M0QZ58 72 aa3.97□□□□□ -1.77
TRIM28-210ENST00000597618 GTF2H5Q6ZYL4 71 aa3.97□□□□□ -1.77
TRIM28-210ENST00000597618 HMCN1Q96RW7 5635 aa3.97□□□□□ -1.77
TRIM28-210ENST00000597618 C20orf197Q8N268 126 aa3.96□□□□□ -1.78
TRIM28-210ENST00000597618 TRAV22A0A0B4J277 110 aa3.95□□□□□ -1.78
TRIM28-210ENST00000597618 ETDBQ3ZM63 59 aa3.95□□□□□ -1.78
TRIM28-210ENST00000597618 ACYP1P07311 99 aa3.94□□□□□ -1.78
TRIM28-210ENST00000597618 LINC01554Q52M75 96 aa3.93□□□□□ -1.78
TRIM28-210ENST00000597618 AHNAK2Q8IVF2 5795 aa3.93□□□□□ -1.78
TRIM28-210ENST00000597618 P0C880 135 aa3.92□□□□□ -1.78
TRIM28-210ENST00000597618 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
TRIM28-210ENST00000597618 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.79
TRIM28-210ENST00000597618 FAM240AA0A1B0GVK7 77 aa3.86□□□□□ -1.79
TRIM28-210ENST00000597618 PCP4L1A6NKN8 68 aa3.86□□□□□ -1.79
TRIM28-210ENST00000597618 ATOX1O00244 68 aa3.85□□□□□ -1.79
TRIM28-210ENST00000597618 UQCRQO14949 82 aa3.85□□□□□ -1.79
TRIM28-210ENST00000597618 ATP5EP2Q5VTU8 51 aa3.85□□□□□ -1.79
TRIM28-210ENST00000597618 KRTAP5-10Q6L8G5 202 aa3.84□□□□□ -1.79
TRIM28-210ENST00000597618 KRTAP19-3Q7Z4W3 81 aa3.84□□□□□ -1.79
TRIM28-210ENST00000597618 MT4P47944 62 aa3.83□□□□□ -1.8
TRIM28-210ENST00000597618 LCE4AQ5TA78 99 aa3.83□□□□□ -1.8
TRIM28-210ENST00000597618 SVIPQ8NHG7 77 aa3.83□□□□□ -1.8
TRIM28-210ENST00000597618 H0Y9P7 68 aa3.82□□□□□ -1.8
TRIM28-210ENST00000597618 HIST1H4AP62805 103 aaKnown RBP3.81□□□□□ -1.8
TRIM28-210ENST00000597618 KRTAP19-7Q3SYF9 63 aa3.8□□□□□ -1.8
TRIM28-210ENST00000597618 MT1EP04732 61 aa3.79□□□□□ -1.8
TRIM28-210ENST00000597618 LINC00643Q86TS7 51 aa3.79□□□□□ -1.8
TRIM28-210ENST00000597618 CYSTM1Q9H1C7 97 aa3.79□□□□□ -1.8
TRIM28-210ENST00000597618 MT-ATP8P03928 68 aa3.78□□□□□ -1.8
TRIM28-210ENST00000597618 LINC00208Q96KT6 92 aa3.75□□□□□ -1.81
TRIM28-210ENST00000597618 OCR1Q9BZK8 76 aa3.75□□□□□ -1.81
TRIM28-210ENST00000597618 KRTAP5-7Q6L8G8 165 aa3.74□□□□□ -1.81
TRIM28-210ENST00000597618 MP68P56378 58 aa3.72□□□□□ -1.81
TRIM28-210ENST00000597618 MT1GP13640 62 aa3.71□□□□□ -1.82
TRIM28-210ENST00000597618 PP632Q6XCG6 107 aa3.7□□□□□ -1.82
TRIM28-210ENST00000597618 H3BPC8 53 aa3.69□□□□□ -1.82
TRIM28-210ENST00000597618 KRTAP5-4Q6L8H1 288 aa3.69□□□□□ -1.82
TRIM28-210ENST00000597618 DMAC1Q96GE9 116 aa3.67□□□□□ -1.82
TRIM28-210ENST00000597618 A0A1B0GV90 55 aa3.66□□□□□ -1.82
TRIM28-210ENST00000597618 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
TRIM28-210ENST00000597618 CAMK2N1Q7Z7J9 78 aa3.65□□□□□ -1.83
TRIM28-210ENST00000597618 J3QR89 54 aa3.63□□□□□ -1.83
TRIM28-210ENST00000597618 MT1MQ8N339 61 aa3.63□□□□□ -1.83
TRIM28-210ENST00000597618 SCGB1A1P11684 91 aa3.61□□□□□ -1.83
TRIM28-210ENST00000597618 KRTAP19-5Q3LI72 72 aa3.61□□□□□ -1.83
TRIM28-210ENST00000597618 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
TRIM28-210ENST00000597618 TRAV7A0A075B6U4 112 aa3.59□□□□□ -1.83
TRIM28-210ENST00000597618 SPTSSBQ8NFR3 76 aa3.57□□□□□ -1.84
TRIM28-210ENST00000597618 A0A0D9SG42 100 aa3.56□□□□□ -1.84
TRIM28-210ENST00000597618 ACYP2P14621 99 aa3.56□□□□□ -1.84
TRIM28-210ENST00000597618 MT1LQ93083 61 aa3.56□□□□□ -1.84
TRIM28-210ENST00000597618 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
TRIM28-210ENST00000597618 SMIM20Q8N5G0 67 aa3.53□□□□□ -1.84
TRIM28-210ENST00000597618 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
TRIM28-210ENST00000597618 KRTAP13-4Q3LI77 160 aa3.5□□□□□ -1.85
TRIM28-210ENST00000597618 KRTAP19-4Q3LI73 84 aa3.47□□□□□ -1.85
TRIM28-210ENST00000597618 KRTAP4-12Q9BQ66 201 aa3.47□□□□□ -1.85
TRIM28-210ENST00000597618 K7ERU9 68 aa3.46□□□□□ -1.86
TRIM28-210ENST00000597618 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
TRIM28-210ENST00000597618 KRTAP9-4Q9BYQ2 154 aa3.46□□□□□ -1.86
TRIM28-210ENST00000597618 KRTAP23-1A1A580 65 aa3.45□□□□□ -1.86
TRIM28-210ENST00000597618 CHKB-CPT1BH3BT56 60 aa3.45□□□□□ -1.86
TRIM28-210ENST00000597618 SPANXA2-OT1Q8N9U9 137 aa3.44□□□□□ -1.86
TRIM28-210ENST00000597618 SNURFQ9Y675 71 aa3.43□□□□□ -1.86
TRIM28-210ENST00000597618 AHNAKQ09666 5890 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms