RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ANAPC13Q9BS18 74 aa4.78□□□□□ -1.64
TRIM28-208ENST00000597172 SNURFQ9Y675 71 aa4.77□□□□□ -1.65
TRIM28-208ENST00000597172 C20orf197Q8N268 126 aa4.76□□□□□ -1.65
TRIM28-208ENST00000597172 C4orf26Q17RF5 130 aa4.74□□□□□ -1.65
TRIM28-208ENST00000597172 COX6B2Q6YFQ2 88 aa4.74□□□□□ -1.65
TRIM28-208ENST00000597172 KRTAP3-1Q9BYR8 98 aa4.73□□□□□ -1.65
TRIM28-208ENST00000597172 CCDC179H3BU77 68 aa4.72□□□□□ -1.65
TRIM28-208ENST00000597172 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
TRIM28-208ENST00000597172 RBM12B-AS1Q9P1G2 102 aa4.71□□□□□ -1.66
TRIM28-208ENST00000597172 GPR98Q8WXG9 6306 aa4.7□□□□□ -1.66
TRIM28-208ENST00000597172 LCE2BO14633 110 aa4.69□□□□□ -1.66
TRIM28-208ENST00000597172 KRTAP9-8Q9BYQ0 159 aa4.68□□□□□ -1.66
TRIM28-208ENST00000597172 KMT2DO14686 5537 aa4.67□□□□□ -1.66
TRIM28-208ENST00000597172 FAM236DA0A1B0GTK5 79 aa4.67□□□□□ -1.66
TRIM28-208ENST00000597172 FAM236CP0DP71 79 aa4.67□□□□□ -1.66
TRIM28-208ENST00000597172 H7BZZ5 65 aa4.66□□□□□ -1.66
TRIM28-208ENST00000597172 H1FX-AS1Q4G0G2 97 aa4.65□□□□□ -1.67
TRIM28-208ENST00000597172 KRTAP19-6Q3LI70 58 aa4.64□□□□□ -1.67
TRIM28-208ENST00000597172 NDUFC1O43677 76 aa4.63□□□□□ -1.67
TRIM28-208ENST00000597172 PCP4P48539 62 aa4.62□□□□□ -1.67
TRIM28-208ENST00000597172 SPANXA2-OT1Q8N9U9 137 aa4.62□□□□□ -1.67
TRIM28-208ENST00000597172 DMAC1Q96GE9 116 aa4.62□□□□□ -1.67
TRIM28-208ENST00000597172 A8MUN3 132 aa4.6□□□□□ -1.67
TRIM28-208ENST00000597172 MDN1Q9NU22 5596 aa4.57□□□□□ -1.68
TRIM28-208ENST00000597172 KRTAP3-3Q9BYR6 98 aa4.57□□□□□ -1.68
TRIM28-208ENST00000597172 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
TRIM28-208ENST00000597172 ACYP2P14621 99 aa4.56□□□□□ -1.68
TRIM28-208ENST00000597172 LCA10Q71F78 164 aa4.56□□□□□ -1.68
TRIM28-208ENST00000597172 KRTAP9-3Q9BYQ3 159 aa4.56□□□□□ -1.68
TRIM28-208ENST00000597172 KRTAP2-4Q9BYR9 128 aa4.56□□□□□ -1.68
TRIM28-208ENST00000597172 S4R3F8 94 aa4.55□□□□□ -1.68
TRIM28-208ENST00000597172 MT2AP02795 61 aa4.54□□□□□ -1.68
TRIM28-208ENST00000597172 TMEM258P61165 79 aa4.51□□□□□ -1.69
TRIM28-208ENST00000597172 MT1FP04733 61 aa4.5□□□□□ -1.69
TRIM28-208ENST00000597172 ATP5EP56381 51 aaPredicted RBP4.48□□□□□ -1.69
TRIM28-208ENST00000597172 KRTAP10-10P60014 251 aa4.48□□□□□ -1.69
TRIM28-208ENST00000597172 CSAG1Q6PB30 78 aa4.48□□□□□ -1.69
TRIM28-208ENST00000597172 COA5Q86WW8 74 aa4.48□□□□□ -1.69
TRIM28-208ENST00000597172 CHKB-CPT1BH3BT56 60 aa4.44□□□□□ -1.7
TRIM28-208ENST00000597172 SPTSSBQ8NFR3 76 aa4.4□□□□□ -1.71
TRIM28-208ENST00000597172 KRTAP3-2Q9BYR7 98 aa4.38□□□□□ -1.71
TRIM28-208ENST00000597172 SERP1Q9Y6X1 66 aa4.38□□□□□ -1.71
TRIM28-208ENST00000597172 H0YAA0 97 aa4.37□□□□□ -1.71
TRIM28-208ENST00000597172 KRTAP2-2Q9BYT5 123 aa4.37□□□□□ -1.71
TRIM28-208ENST00000597172 KRTAP2-1Q9BYU5 128 aa4.37□□□□□ -1.71
TRIM28-208ENST00000597172 KRTAP5-9P26371 169 aa4.36□□□□□ -1.71
TRIM28-208ENST00000597172 ADM2Q7Z4H4 148 aa4.35□□□□□ -1.71
TRIM28-208ENST00000597172 P0C880 135 aa4.31□□□□□ -1.72
TRIM28-208ENST00000597172 RPS28P62857 69 aaKnown RBP4.31□□□□□ -1.72
TRIM28-208ENST00000597172 LINC01558Q9Y6Z2 57 aa4.27□□□□□ -1.73
TRIM28-208ENST00000597172 SMIM26A0A096LP01 95 aa4.24□□□□□ -1.73
TRIM28-208ENST00000597172 SEC61GP60059 68 aa4.24□□□□□ -1.73
TRIM28-208ENST00000597172 CRIPTQ9P021 101 aa4.23□□□□□ -1.73
TRIM28-208ENST00000597172 A0A1B0GU69 56 aa4.22□□□□□ -1.73
TRIM28-208ENST00000597172 Q1T7F1 81 aa4.22□□□□□ -1.73
TRIM28-208ENST00000597172 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
TRIM28-208ENST00000597172 A6NN06 94 aa4.19□□□□□ -1.74
TRIM28-208ENST00000597172 SPRR2EP22531 72 aa4.19□□□□□ -1.74
TRIM28-208ENST00000597172 SPRR2BP35325 72 aa4.19□□□□□ -1.74
TRIM28-208ENST00000597172 SPRR2AP35326 72 aa4.19□□□□□ -1.74
TRIM28-208ENST00000597172 A0A1B0GU33 70 aa4.18□□□□□ -1.74
TRIM28-208ENST00000597172 KRTAP13-4Q3LI77 160 aa4.18□□□□□ -1.74
TRIM28-208ENST00000597172 V9GYY9 64 aa4.18□□□□□ -1.74
TRIM28-208ENST00000597172 M0QZ58 72 aa4.17□□□□□ -1.74
TRIM28-208ENST00000597172 PRR15LQ9BU68 103 aa4.17□□□□□ -1.74
TRIM28-208ENST00000597172 R4GN34 69 aa4.17□□□□□ -1.74
TRIM28-208ENST00000597172 PSPHP1O15172 72 aa4.14□□□□□ -1.75
TRIM28-208ENST00000597172 KRTAP19-8Q3LI54 63 aa4.14□□□□□ -1.75
TRIM28-208ENST00000597172 SPATA8Q6RVD6 105 aa4.13□□□□□ -1.75
TRIM28-208ENST00000597172 Q5VV11 94 aa4.12□□□□□ -1.75
TRIM28-208ENST00000597172 MT1BP07438 61 aa4.11□□□□□ -1.75
TRIM28-208ENST00000597172 LINC01554Q52M75 96 aa4.09□□□□□ -1.75
TRIM28-208ENST00000597172 SPRR2FQ96RM1 72 aa4.08□□□□□ -1.76
TRIM28-208ENST00000597172 DSTQ03001 7570 aaKnown RBP4.06□□□□□ -1.76
TRIM28-208ENST00000597172 UQCR11O14957 56 aa4.06□□□□□ -1.76
TRIM28-208ENST00000597172 SPRR2DP22532 72 aa4.06□□□□□ -1.76
TRIM28-208ENST00000597172 A0A0D9SG42 100 aa4.05□□□□□ -1.76
TRIM28-208ENST00000597172 A8MU10 97 aa4.05□□□□□ -1.76
TRIM28-208ENST00000597172 LCE1AQ5T7P2 110 aa4.03□□□□□ -1.76
TRIM28-208ENST00000597172 MIR22HGQ0VDD5 57 aa4.01□□□□□ -1.77
TRIM28-208ENST00000597172 KRTAP12-1P59990 96 aa4□□□□□ -1.77
TRIM28-208ENST00000597172 KRTAP10-5P60370 271 aa4□□□□□ -1.77
TRIM28-208ENST00000597172 LCE3BQ5TA77 95 aa4□□□□□ -1.77
TRIM28-208ENST00000597172 PLAC4Q8WY50 150 aa4□□□□□ -1.77
TRIM28-208ENST00000597172 A6NED7 52 aa3.99□□□□□ -1.77
TRIM28-208ENST00000597172 KRTAP12-2P59991 146 aa3.98□□□□□ -1.77
TRIM28-208ENST00000597172 SPINT4Q6UDR6 99 aa3.96□□□□□ -1.78
TRIM28-208ENST00000597172 HMCN1Q96RW7 5635 aa3.95□□□□□ -1.78
TRIM28-208ENST00000597172 AHNAK2Q8IVF2 5795 aa3.95□□□□□ -1.78
TRIM28-208ENST00000597172 MT1XP80297 61 aa3.93□□□□□ -1.78
TRIM28-208ENST00000597172 KRTAP4-9Q9BYQ8 210 aa3.93□□□□□ -1.78
TRIM28-208ENST00000597172 SVIPQ8NHG7 77 aa3.92□□□□□ -1.78
TRIM28-208ENST00000597172 CDC42SE1Q9NRR8 79 aa3.91□□□□□ -1.78
TRIM28-208ENST00000597172 CAMK2N1Q7Z7J9 78 aa3.88□□□□□ -1.79
TRIM28-208ENST00000597172 PRO2289Q9P1D8 64 aa3.85□□□□□ -1.79
TRIM28-208ENST00000597172 KRTAP5-10Q6L8G5 202 aa3.83□□□□□ -1.8
TRIM28-208ENST00000597172 KRTAP8-1Q8IUC2 63 aa3.83□□□□□ -1.8
TRIM28-208ENST00000597172 K7ERS5 55 aa3.82□□□□□ -1.8
TRIM28-208ENST00000597172 BRK1Q8WUW1 75 aa3.81□□□□□ -1.8
TRIM28-208ENST00000597172 C10orf95Q9H7T3 257 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms