RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MRPL34Q9BQ48 92 aaKnown RBP5.23□□□□□ -1.57
LIG1-213ENST00000596672 NDUFS5O43920 106 aa5.22□□□□□ -1.57
LIG1-213ENST00000596672 MT1FP04733 61 aa5.22□□□□□ -1.57
LIG1-213ENST00000596672 PRO0628Q9UI54 55 aa5.22□□□□□ -1.57
LIG1-213ENST00000596672 SPANXA2-OT1Q8N9U9 137 aa5.21□□□□□ -1.58
LIG1-213ENST00000596672 V9GYY9 64 aa5.21□□□□□ -1.58
LIG1-213ENST00000596672 TP53AIP1Q9HCN2 124 aa5.2□□□□□ -1.58
LIG1-213ENST00000596672 TRAV22A0A0B4J277 110 aa5.19□□□□□ -1.58
LIG1-213ENST00000596672 H0Y9P7 68 aa5.18□□□□□ -1.58
LIG1-213ENST00000596672 KRTAP9-3Q9BYQ3 159 aa5.18□□□□□ -1.58
LIG1-213ENST00000596672 Q1T7F1 81 aa5.17□□□□□ -1.58
LIG1-213ENST00000596672 LINC00208Q96KT6 92 aa5.17□□□□□ -1.58
LIG1-213ENST00000596672 C1orf64Q8NEQ6 169 aa5.16□□□□□ -1.58
LIG1-213ENST00000596672 Q8N9P0 234 aaPredicted RBP5.15□□□□□ -1.59
LIG1-213ENST00000596672 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.13□□□□□ -1.59
LIG1-213ENST00000596672 Q5W150 140 aa5.13□□□□□ -1.59
LIG1-213ENST00000596672 SPINK7P58062 85 aa5.1□□□□□ -1.59
LIG1-213ENST00000596672 BRK1Q8WUW1 75 aa5.1□□□□□ -1.59
LIG1-213ENST00000596672 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
LIG1-213ENST00000596672 KRTAP10-10P60014 251 aa5.08□□□□□ -1.6
LIG1-213ENST00000596672 RBM12B-AS1Q9P1G2 102 aa5.08□□□□□ -1.6
LIG1-213ENST00000596672 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
LIG1-213ENST00000596672 MACF1Q9UPN3 7388 aaKnown RBP5.05□□□□□ -1.6
LIG1-213ENST00000596672 SYNE2Q8WXH0 6885 aaKnown RBP5.04□□□□□ -1.6
LIG1-213ENST00000596672 LOC101927531A0A1B0GV80 90 aa5.04□□□□□ -1.6
LIG1-213ENST00000596672 IGKV2D-30A0A075B6S6 120 aa5.01□□□□□ -1.61
LIG1-213ENST00000596672 IGKV2-30P06310 120 aa5.01□□□□□ -1.61
LIG1-213ENST00000596672 COA5Q86WW8 74 aa5.01□□□□□ -1.61
LIG1-213ENST00000596672 PSPHP1O15172 72 aa4.99□□□□□ -1.61
LIG1-213ENST00000596672 A8MUN3 132 aa4.98□□□□□ -1.61
LIG1-213ENST00000596672 LOC100996750A0A140TA64 210 aa4.97□□□□□ -1.61
LIG1-213ENST00000596672 Q5VV11 94 aa4.97□□□□□ -1.61
LIG1-213ENST00000596672 KRTAP4-6Q9BYQ5 205 aa4.97□□□□□ -1.61
LIG1-213ENST00000596672 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.62
LIG1-213ENST00000596672 PRR15LQ9BU68 103 aa4.96□□□□□ -1.62
LIG1-213ENST00000596672 CHKB-CPT1BH3BT56 60 aa4.95□□□□□ -1.62
LIG1-213ENST00000596672 C7orf65Q6ZTY9 151 aa4.95□□□□□ -1.62
LIG1-213ENST00000596672 LINC01558Q9Y6Z2 57 aa4.95□□□□□ -1.62
LIG1-213ENST00000596672 ACYP2P14621 99 aa4.93□□□□□ -1.62
LIG1-213ENST00000596672 A6NED7 52 aa4.9□□□□□ -1.63
LIG1-213ENST00000596672 H1FX-AS1Q4G0G2 97 aa4.9□□□□□ -1.63
LIG1-213ENST00000596672 PMAIP1Q13794 54 aa4.89□□□□□ -1.63
LIG1-213ENST00000596672 KRTAP3-1Q9BYR8 98 aa4.88□□□□□ -1.63
LIG1-213ENST00000596672 CDC42SE1Q9NRR8 79 aa4.88□□□□□ -1.63
LIG1-213ENST00000596672 DMAC1Q96GE9 116 aa4.86□□□□□ -1.63
LIG1-213ENST00000596672 LCA10Q71F78 164 aa4.81□□□□□ -1.64
LIG1-213ENST00000596672 SPTSSBQ8NFR3 76 aa4.8□□□□□ -1.64
LIG1-213ENST00000596672 MT1BP07438 61 aa4.78□□□□□ -1.64
LIG1-213ENST00000596672 KTN1-AS1Q86SY8 53 aa4.78□□□□□ -1.64
LIG1-213ENST00000596672 A0A1B0GU69 56 aa4.76□□□□□ -1.65
LIG1-213ENST00000596672 NEBP20929 6669 aa4.76□□□□□ -1.65
LIG1-213ENST00000596672 KRTAP6-3Q3LI67 103 aa4.75□□□□□ -1.65
LIG1-213ENST00000596672 MUC12Q9UKN1 5478 aa4.75□□□□□ -1.65
LIG1-213ENST00000596672 A6NN06 94 aa4.74□□□□□ -1.65
LIG1-213ENST00000596672 SEC61GP60059 68 aa4.74□□□□□ -1.65
LIG1-213ENST00000596672 A8MU10 97 aa4.72□□□□□ -1.65
LIG1-213ENST00000596672 UQCR11O14957 56 aa4.71□□□□□ -1.66
LIG1-213ENST00000596672 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.66
LIG1-213ENST00000596672 SPATA8Q6RVD6 105 aa4.7□□□□□ -1.66
LIG1-213ENST00000596672 SPRR2GQ9BYE4 73 aa4.7□□□□□ -1.66
LIG1-213ENST00000596672 S4R3F8 94 aa4.68□□□□□ -1.66
LIG1-213ENST00000596672 MIR22HGQ0VDD5 57 aa4.66□□□□□ -1.66
LIG1-213ENST00000596672 CSAG1Q6PB30 78 aa4.64□□□□□ -1.67
LIG1-213ENST00000596672 KMT2DO14686 5537 aa4.64□□□□□ -1.67
LIG1-213ENST00000596672 KRTAP10-5P60370 271 aa4.63□□□□□ -1.67
LIG1-213ENST00000596672 MDN1Q9NU22 5596 aa4.59□□□□□ -1.67
LIG1-213ENST00000596672 KRTAP5-9P26371 169 aa4.52□□□□□ -1.69
LIG1-213ENST00000596672 A0A1B0GU33 70 aa4.5□□□□□ -1.69
LIG1-213ENST00000596672 K7ERS5 55 aa4.48□□□□□ -1.69
LIG1-213ENST00000596672 ADM2Q7Z4H4 148 aa4.48□□□□□ -1.69
LIG1-213ENST00000596672 CRIPTQ9P021 101 aa4.46□□□□□ -1.7
LIG1-213ENST00000596672 H0YAA0 97 aa4.45□□□□□ -1.7
LIG1-213ENST00000596672 MT1XP80297 61 aa4.45□□□□□ -1.7
LIG1-213ENST00000596672 P0C880 135 aa4.44□□□□□ -1.7
LIG1-213ENST00000596672 LINC01554Q52M75 96 aa4.42□□□□□ -1.7
LIG1-213ENST00000596672 PRAC1Q96KF2 57 aa4.42□□□□□ -1.7
LIG1-213ENST00000596672 KRTAP20-1Q3LI63 56 aa4.4□□□□□ -1.71
LIG1-213ENST00000596672 KRTAP4-8Q9BYQ9 185 aa4.37□□□□□ -1.71
LIG1-213ENST00000596672 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
LIG1-213ENST00000596672 KRTAP4-8A0A0G2JLE6 195 aa4.32□□□□□ -1.72
LIG1-213ENST00000596672 SPRR2FQ96RM1 72 aa4.32□□□□□ -1.72
LIG1-213ENST00000596672 KRTAP25-1Q3LHN0 102 aa4.31□□□□□ -1.72
LIG1-213ENST00000596672 H3BS24 57 aa4.3□□□□□ -1.72
LIG1-213ENST00000596672 M0QZ58 72 aa4.3□□□□□ -1.72
LIG1-213ENST00000596672 R4GN34 69 aa4.29□□□□□ -1.72
LIG1-213ENST00000596672 A0A0D9SG42 100 aa4.28□□□□□ -1.72
LIG1-213ENST00000596672 KRTAP12-2P59991 146 aa4.28□□□□□ -1.72
LIG1-213ENST00000596672 ROMO1P60602 79 aa4.28□□□□□ -1.72
LIG1-213ENST00000596672 LCE1AQ5T7P2 110 aa4.28□□□□□ -1.72
LIG1-213ENST00000596672 KRTAP2-3P0C7H8 128 aa4.27□□□□□ -1.73
LIG1-213ENST00000596672 SPRR2EP22531 72 aa4.27□□□□□ -1.73
LIG1-213ENST00000596672 SPRR2BP35325 72 aa4.27□□□□□ -1.73
LIG1-213ENST00000596672 SPRR2AP35326 72 aa4.27□□□□□ -1.73
LIG1-213ENST00000596672 KRTAP2-4Q9BYR9 128 aa4.27□□□□□ -1.73
LIG1-213ENST00000596672 KRTAP10-7P60409 375 aaPredicted RBP4.26□□□□□ -1.73
LIG1-213ENST00000596672 PLAC4Q8WY50 150 aa4.26□□□□□ -1.73
LIG1-213ENST00000596672 KRTAP8-1Q8IUC2 63 aa4.25□□□□□ -1.73
LIG1-213ENST00000596672 PRO2289Q9P1D8 64 aa4.24□□□□□ -1.73
LIG1-213ENST00000596672 KRTAP10-12P60413 245 aa4.19□□□□□ -1.74
LIG1-213ENST00000596672 SPINT4Q6UDR6 99 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms